Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00889 ATGGGTAGTGAGAGTGAGATGATGATCCCATGTCTGAATTTTCACAGCAATGTAATGGAATTAGAAGAAGGGAGTAAGGAATGGAAAGTCATGAGCAAGAAAGTGAGAGAAGCTTGTGAGAATCATGGTTGCTTCCTTTTGTTGTGTGATGAGATCTCAAAGGGTGAACTTGAAGAATTGTTCAAGGCCTTGAAAGCACTGTTTGATCTTCCTGAAGAAACCAAGCAGAGGCATGTTTGCCCAAAACCTTACAGGAGCTACTTAGGCAAGTGCCCTGTCATTCCCCTGTCTGAAAGCTTTGGGATTGATGATGCTCCTCTGCCAGCTATGGCTCAGGCCTTCACTCACAATATGTGGCCTCAAGGAAACCCAGTTTTCTGTGAGACATTGAAGTCCATGAGCTCAAAGATGTTAAATTTGTGTTTCCTCATCATGAAAATGATTACAAAAGGTTATGTCCTTCCGCAACATTACATTTCAGATGTTGAAAACATGATGAGCAGTAGCAATTCAAGGTTGATGAAGTACAAAGTTCCTGAAAACAGCAGCAACGATGCCTCTGAGGTTGCCCTCATAGCTCACACCGACAAAAGTGCCTTAGCCATTCTATGCCAAAATGAAGTCCAAGGTCTACAGATCCTAACCAAAACTGGAAAATGGATTGATTTAAAGATTCCCCGTGATGGATTTGTGGTCATTGTTGGTGATATATTGAAGGCATGGAGCAATGGGAGACTTCATGCAGCCACACACAGAGTGATGATGAGTGGAGAGAAAGAGAGGTACTCATTTGGACTTTTTGCAGTGCCAAAGGATGATGTTGTCATTAAGGTGCCACATGAGCTGGTTGATGACGAAATTCATCCTCTCCGTTACAAGTCATTCAAATATGGGGAGTACTTCAATTATCATGTTTCAACTCTCAAAGAAAATGCACTTGAAGCATTTGCAGGCCTTTGA 960 0.4219 MGSESEMMIPCLNFHSNVMELEEGSKEWKVMSKKVREACENHGCFLLLCDEISKGELEELFKALKALFDLPEETKQRHVCPKPYRSYLGKCPVIPLSESFGIDDAPLPAMAQAFTHNMWPQGNPVFCETLKSMSSKMLNLCFLIMKMITKGYVLPQHYISDVENMMSSSNSRLMKYKVPENSSNDASEVALIAHTDKSALAILCQNEVQGLQILTKTGKWIDLKIPRDGFVVIVGDILKAWSNGRLHAATHRVMMSGEKERYSFGLFAVPKDDVVIKVPHELVDDEIHPLRYKSFKYGEYFNYHVSTLKENALEAFAGL. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00889 319 FunFam 2-oxoglutarate-dependent dioxygenase DAO 7 318 - -
Seca4g00889 319 Pfam non-haem dioxygenase in morphine synthesis N-terminal 23 89 IPR026992 -
Seca4g00889 319 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 300 - -
Seca4g00889 319 Gene3D - 9 317 IPR027443 -
Seca4g00889 319 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 168 270 IPR005123 -
Seca4g00889 319 Pfam 2OG-Fe(II) oxygenase superfamily 174 267 IPR044861 -
Seca4g00889 319 SUPERFAMILY Clavaminate synthase-like 7 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00889 Seca-Chr4 14742387 14744798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00889 3 300 Glycosyltransferase AT5G59530 24.204 1.36e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00889 - - gmx:100817159 446.432