Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00884 ATGGCCACTCTCTCTGAAGCCTATAGAGAAAACCCTCTCCACCTTCATCATATTATCCCCTTGGACTTTTCTTCAGTTATGACCTTACCTGATTCCCATGCATGGTCTTTGTCTAATGATGATATTGATTATTTCTCATTCAATGGTGAAGTTGGATCATCCATGACCATACCCATCATAGACCTCATGGATCCTAATGCCATGGAACTCATAGGTCATGCATGTGAGGAGTGGGGTGCCTTCCAATTGAAGAATCATGGCATACCCTTGAGTTTGATTGAAGAGGTTGAAGAAGAGGCCAAAAGTCTCTTTGCTCTCCCAACTGAGCAAAAGCTAAAGGCACTTAGATCTCCTAGTGGTGCCACTGGGTATGGTAGAGCAAGGATATCACAATTCTTCCCCAAGTCCATGTGGCATGAAGGGTTTACCATCATGGGTTCTCCATATGAAAATGCCAAAAAGATATGGCCTAATGATGACTGTGCACGGTTTTGTGATTTGATGGAGAAATATCAAAAGCAAATGAGGGCTCTATCAGAGCAACTAACAAAGATGATGTTGAACTTGTTGGACATAAGTGAAGAAGAATTGAAAAGTGTTGTTTCAAGCAACATGTGTGGAGCTCTTCAACTAAATTTCTACCCAAAATGTCCAGAGCCAAAGAGAGCAATGGGTTTAGCCCCTCACACAGACACATCTCTTTTCACAATCCTTCACCAAAGCCAAACCACTGGCCTTCAAATCTTCAACGAACAAGGAATTAAAAGATGGGTTCCTGTGCACCCAAATCCTAACCTTCTTGTTGTTAACATTGGTGACATCTTCCATATCATATCAAACGCAAGGTTCCGTTGTGCACTTCACCGTGTCACTGTGAATAAGACCAAGAAACGTTACTCAGTGGCTTATTTCTATTGTCCACCAGTGGATTATGTGGTTTCTCCTTTGGATCTAAATTCTGTTGCTCGTTTTCGTGCTGTGACTGTGAAGGAGTATATTGGGATTAAGGCCAAGAATTTTGGGCAAGCACTGTCTTTGATTAGTACTTAA 1050 0.4181 MATLSEAYRENPLHLHHIIPLDFSSVMTLPDSHAWSLSNDDIDYFSFNGEVGSSMTIPIIDLMDPNAMELIGHACEEWGAFQLKNHGIPLSLIEEVEEEAKSLFALPTEQKLKALRSPSGATGYGRARISQFFPKSMWHEGFTIMGSPYENAKKIWPNDDCARFCDLMEKYQKQMRALSEQLTKMMLNLLDISEEELKSVVSSNMCGALQLNFYPKCPEPKRAMGLAPHTDTSLFTILHQSQTTGLQIFNEQGIKRWVPVHPNPNLLVVNIGDIFHIISNARFRCALHRVTVNKTKKRYSVAYFYCPPVDYVVSPLDLNSVARFRAVTVKEYIGIKAKNFGQALSLIST. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00884 349 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 157 IPR026992 -
Seca4g00884 349 Coils Coil 168 188 - -
Seca4g00884 349 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 57 332 - -
Seca4g00884 349 SUPERFAMILY Clavaminate synthase-like 16 341 - -
Seca4g00884 349 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 307 IPR005123 -
Seca4g00884 349 FunFam Gibberellin 3-beta-dioxygenase 1 17 335 - -
Seca4g00884 349 Gene3D - 25 340 IPR027443 -
Seca4g00884 349 Pfam 2OG-Fe(II) oxygenase superfamily 209 307 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00884 Seca-Chr4 14575195 14577964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00884 53 332 Glycosyltransferase AT5G59530 29.139 9.08e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00884 K04124 - gmx:100794325 523.857