Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00880 ATGCTCAAGCAATTCCTCAGTAAACTTCCTCGCAAGACATCGAAACCCGACTCGGACGAGTCATGCCGAGGCGACTCGTCACGCGCCCGGGACGCTTCCCCACGCGCCGCCGTCAGGAACAGCCGTTCAAATGGCGGCAGCTCCACCGCAAAACGAACTTCGTCGTCGGCGGTTTTTCCGGCGAGCACCGTGTCGGTGATCGAACCTTTGGTGCCGTTCAAGGATGTTCCAAGCTCCGAGAAGATGAACCTGTTTGTGAGCAAGTTGAGCCTTTGTTGCGTGACGTTTGATTTCACTGACCCAGGTAAGAACACGGTGGAGAAAGATGTAAAAAGACGAACTTTGGTTGAACTTGTTGATTTTGTGTCTTCTTATGGGTCTGGGAGGTTTGGTGAACCTGCTATTCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCAAATTATCGATCTAATCGAGGTGGTGAGAATGATGATGATGAACCAGCTTTTGATCCTGCTTGGCCACATTTGCAGCTTGTGTATGAATTGCTGCTTAAGTTCATCACATCTTCTAGCCTTGATGCTAAGGTGGCCAAGAAGTATATTGACCATTCGTTTATTTCAAGGTTGTTGGAGTTGTTTGATTCGGAGGATCCTAGGGAAAAAGACTGCTTGAAGACAATTCTCCATAGGGTTTATGGAAAGTTCATGGTTCATAGACCTTACATTCGAAAATCTATTAACAATGTGTTTTATAGATTTGTTTTTGAGACTGAGAAACACAATGGGATTGCTGAGTTGTTGGAGGTTTTTGGAAGCATAATCAGTGGGTTTGCTTTGCCCTTGAAAGAGGAACACAAAATGTTCTTGTGGAGGGTTTTGATCCCCTTGCACAAGCCAAAGTCTATGGGGGTCTATTTCCAGCAACTGTCCTACTGTGTTACACAGTTTATAGAGAAGGAGCCTAAGTTAGCAAGCATTGTGATAAGGGGTTTGTTGAAATATTGGCCAATAATAAATAGCCAGAAAGAGGTGATGTTCCTGAGTGAACTGGAAGAAATTTTGGAAGCAATTAACATGGTAGAGTTCCAGAGGGTCATGGTGCCTTTGTTTTGGCGGATTGGATGCTGCATTAACAGTTTACACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAATGACCATATTGTCAACTTGATTGCACACAATCGTCAAGTGATCCTGCCAATCATATTTCCAGCTTTAGAAAGGAACTCTCAAAGCCACTGGAACCCAGCAGTGCTAAACTTAACTCACAATGTTAGAAAGATGTTCATGGAGATGGATGAGAAGCTGTTCCTATCTTGTCATTCTCAGTTTAAGGAGGAAGAAACAATGCTAAACTCAGCAGCTGAGAAGAGGAAGGAAGCATGGAAACAACTAGAGCATGCAGCCAGTCTTCAACCTGTAATTGGAAATACAGCTGTTTTAGTGTCTCCAATTTGA 1488 0.4382 MLKQFLSKLPRKTSKPDSDESCRGDSSRARDASPRAAVRNSRSNGGSSTAKRTSSSAVFPASTVSVIEPLVPFKDVPSSEKMNLFVSKLSLCCVTFDFTDPGKNTVEKDVKRRTLVELVDFVSSYGSGRFGEPAILAMCRMCAINLFRVFPPNYRSNRGGENDDDEPAFDPAWPHLQLVYELLLKFITSSSLDAKVAKKYIDHSFISRLLELFDSEDPREKDCLKTILHRVYGKFMVHRPYIRKSINNVFYRFVFETEKHNGIAELLEVFGSIISGFALPLKEEHKMFLWRVLIPLHKPKSMGVYFQQLSYCVTQFIEKEPKLASIVIRGLLKYWPIINSQKEVMFLSELEEILEAINMVEFQRVMVPLFWRIGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALERNSQSHWNPAVLNLTHNVRKMFMEMDEKLFLSCHSQFKEEETMLNSAAEKRKEAWKQLEHAASLQPVIGNTAVLVSPI. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00880 495 PIRSF PP2A_B56 4 492 IPR002554 GO:0000159|GO:0007165|GO:0019888
Seca4g00880 495 MobiDBLite consensus disorder prediction 10 32 - -
Seca4g00880 495 MobiDBLite consensus disorder prediction 1 54 - -
Seca4g00880 495 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 77 478 - -
Seca4g00880 495 SUPERFAMILY ARM repeat 83 475 IPR016024 -
Seca4g00880 495 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 480 IPR002554 GO:0000159|GO:0007165|GO:0019888
Seca4g00880 495 Gene3D - 77 478 IPR011989 -
Seca4g00880 495 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 72 479 IPR002554 GO:0000159|GO:0007165|GO:0019888
Seca4g00880 495 MobiDBLite consensus disorder prediction 37 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00880 Seca-Chr4 14522078 14525227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00880 K11584 - gmx:100775273 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00880 4 14522078 14525227 Seca4g00880 4 14522078 14525227 ECH
Seca4g00880 4 14522078 14525227 Seca4g00880 4 14522078 14525227 PCT