Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00873 ATGTCCAACAATCTGGTTTCGGAGCCTATGCCAAGCGTGCAGATGGCACAGTTGGATCCCATTCTGAAGAATGTTGATTCATCAGGGAGACAGATGGAAATGGGACTCTTGGGTCCTGTATCTAGGGATCCTATGTCACAGCATCAAGGAGCATCAAATGATCATGGTGGACTATTAAGAGCTGTGCCTGGTGAATCCAGGATGCATAGTGGGCGGGTAGAAGCACAAGTACCTAACAAACAATCCATGCCAATGGGGACAATTCCGAATAACGTGGGGCATCAGCAATTGTCACTAACTCCCAAGCGGAAGGCACCGATGGAACTGTCATCCAGTAGCTCCATGACATCTAGCAAGCGGGTTGCACAAATGGGACATAGGCCTTGGTTGCAGCAAGCATCTAATGCATCAACTAAAGGTTCTCCACAGATGCAATCCCCAAGGCCACAGCCATTGGCAGTATCTAGTAAGAGAAAAACACAACAGATGGAATTTACTTCCACTAAATCTGGGACACCTCGATCCTCAAATTCTAAGAGTCAAAATACACAGATGAAACAATCCTCCAAGGTTCAAACTGAATCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAGAAAGATAAACCTCCAGTTTCAAACAATAATACACTAAAAGATTCTGCCAATACTCAGAGTAAATTAGAGAACAACTCTCAGTGTGCTGGGTCAGGACCTGCATCGATTGATACTTCTCTGGAGCAAAAGGAGGAGATTTCTCAATCTGTTGATTCCTCTTTTGCTGCAGCTCATTCAGTTGGCCATGTGATGGGAGAGGGAGAGCACAAAAAGAGTGCAGTGTCAAACAATGAAAATATACTGAGTTCTATGGAAGTCCTGAACTGTGATAAGCAAGACTTCCAGTCTAGTTACACTTTGACTACTGATGATCTTCCTTTCAGTGACGGTTTTTTTATGAAAGATGAACTTTTGCAGGGAAATGGTCTATCCTGGGTATTATCTGATATGGTGGACATGGAAAATCATAGGGAAGGTAATATAGAGCAGAGATCAGAACCTGAGGAAACAGATGGAGTTTGTAGGGAGACGGCCCCTTTACCTGAACATTTAGCATCTAGGATAGAAGCAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAGGGAAGGTCGCTTTTATTCAATTTGAAAGATCGCAATAATCCTGAATTAAGAGAAAGGGTTATGTTTGGTGAAATTCCCCCAGAACAGTTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAGGAGCTTTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCCGATTCAGATGTTGATATTAGACGTTTGGTCAGGAAAACACATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTCTCAGTGGAAGAGGTTTCAGGTGGCACAACCTCAGTTGCTCGAAGCCAAACAATTAACAAGGATGTGGAAACCACTTCTCCTTCCAAATCTGATGTGATCAAAAGTGATGTGACAACTGATGGTGAGAAGAGCAATTTACAGAAGGATAATCCATTTTCCATTACCATTTCTTCCAATGATGGGACTGATCCAATGCAAGGGCTTATGACAGATGATGCATTAAAGGACCCTGATTTTCTTCCACCAATTGTCTCTCTTGATGAATTTATGGAATCCCTTCATTCTGAGCCACCATTTGAAAATTTACCAGTAGAATCTGAAAAAGTGACACCTATCTCAGACAAGGATGATTCTGGAGTTGGATCTTCTAAGTCAAAATCTTCTGATTTAACTCCAGGTGAGCAAGCTGATGTCACTGCTGATAAGTCTGAGAAGGTTCAAAGCACATTTGTAAATTCAGATGCTTTAGAGGAGAAAAGAGTTCATGCAGAATCTGGAGCTATTTCGTCTGATACAAGATACAGTGAGAGTCAAGCTGACATGAAGCCGACTGATGGTCATTGTAAGGAAAGGTCAACTGATGACAAGAAGTCTTCTTCCAGTGATGCTGAGTTGAGAGCCAGTCAATTTCTTGCAAATGAGAGATATGGTAATGATAATGCACATTCAAAAACTACTACAGTCCCCATTAAGGGTGAGTGCCTCTGGGAGGGAATGCTTCAACTGAATATCTCTACCACTCATTCCGTCATAAGCATCTTCAAAAGGCGGTGA 2247 0.425 MSNNLVSEPMPSVQMAQLDPILKNVDSSGRQMEMGLLGPVSRDPMSQHQGASNDHGGLLRAVPGESRMHSGRVEAQVPNKQSMPMGTIPNNVGHQQLSLTPKRKAPMELSSSSSMTSSKRVAQMGHRPWLQQASNASTKGSPQMQSPRPQPLAVSSKRKTQQMEFTSTKSGTPRSSNSKSQNTQMKQSSKVQTESSESVRSKMRESLAAALALVSQKDKPPVSNNNTLKDSANTQSKLENNSQCAGSGPASIDTSLEQKEEISQSVDSSFAAAHSVGHVMGEGEHKKSAVSNNENILSSMEVLNCDKQDFQSSYTLTTDDLPFSDGFFMKDELLQGNGLSWVLSDMVDMENHREGNIEQRSEPEETDGVCRETAPLPEHLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGEIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVSVEEVSGGTTSVARSQTINKDVETTSPSKSDVIKSDVTTDGEKSNLQKDNPFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESEKVTPISDKDDSGVGSSKSKSSDLTPGEQADVTADKSEKVQSTFVNSDALEEKRVHAESGAISSDTRYSESQADMKPTDGHCKERSTDDKKSSSSDAELRASQFLANERYGNDNAHSKTTTVPIKGECLWEGMLQLNISTTHSVISIFKRR. 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00873 748 MobiDBLite consensus disorder prediction 105 121 - -
Seca4g00873 748 ProSiteProfiles TFIIS central domain profile. 352 468 IPR003618 GO:0006351
Seca4g00873 748 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 92 738 - -
Seca4g00873 748 MobiDBLite consensus disorder prediction 511 525 - -
Seca4g00873 748 MobiDBLite consensus disorder prediction 218 252 - -
Seca4g00873 748 MobiDBLite consensus disorder prediction 535 556 - -
Seca4g00873 748 SUPERFAMILY Elongation factor TFIIS domain 2 376 444 IPR036575 GO:0006351
Seca4g00873 748 MobiDBLite consensus disorder prediction 511 565 - -
Seca4g00873 748 Gene3D - 351 443 IPR036575 GO:0006351
Seca4g00873 748 MobiDBLite consensus disorder prediction 128 196 - -
Seca4g00873 748 Pfam Transcription factor S-II (TFIIS), central domain 365 456 IPR003618 GO:0006351
Seca4g00873 748 MobiDBLite consensus disorder prediction 75 98 - -
Seca4g00873 748 MobiDBLite consensus disorder prediction 1 252 - -
Seca4g00873 748 SMART mid_6 350 451 IPR003618 GO:0006351
Seca4g00873 748 MobiDBLite consensus disorder prediction 582 695 - -
Seca4g00873 748 MobiDBLite consensus disorder prediction 669 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00873 Seca-Chr4 14455369 14462305 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00873 - - gmx:100808809 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00873 4 14455369 14462305 Seca4g00873 4 14455369 14462305 ECH