LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00870	ATGAGCACCTCATTTTTTGGGATTAACCTTCATGCTCCTCTGAAAGGTATCAATGGCAATCATTTGGAGAGAAGGCATTCCCCCAAAAGCAAAAGGTACGTTGTATCTGCGAAACACGGTACCCCAGTAAGGCAAGCTTTTAGTTTTTGTGGCCAAAATGTAAACTTGTTGAGGAGACACCTCGTTTCCGCAAGTGGGTCGAGGTTGAAATGCACCAGGGAACCACCCTTTTCTCTGAACGTGAGATTTTTGACCCCATTGTGGAAAGAGGGGCTTCTTTTGATAAGGGCCTCTGTTTACACTGTTGTTATTTCTGGTTTGTGCCTCTTGGTTTGGTTTGGCCGGAATAAAGCTAAGGGTTATGTTGAAGCCAACCTCTTGCCTTCTGTTTGTTCAGTAATTAGTGAGTACATTCAACGTGATATTCAGTTTGGCAAGGTTAGAAGAATCACCCCGTTGAGTGTAACATTGGAGTCATGTTCATTTGGGCCTCATAAGGAGGAATTTTCTTGTGGTGAAGCTCTCACAGTTAAGCTTCGTTTTCATCCTCTTGCAAGTCTGAGGAGGGGAATGTTTGTGGTTGATGCAATTTTGTCACATCCGAATGTATTGGTTGTGCAGAAGAAGGACTATAGTTGGTTAGGAATACCGTCCACTGAAGGTGGCAGCATAAAGAGGCACTTGTCTAGTGAAGAAGGGATTGATCATCGTACTAGAGCGAGGAGGCTTGCACGAGAGGAAGCGGCTGTTCAATGGACAAAAGAAAGGGATGATGCAGCTAGGGAAGCTGCAGAGATGGGTTACTTTGTTTCTGAGCAGAATTGTGGTCCCTCCCAAGGTGATGATTTAAAGGAGATTGCAAGTCATTCAATAGGAGCAACAAACTCCAGCTCTTTTTTCTGCATGAATGAGGGGAAGCACATTCATCATTGCATGGACAAAGGTGTTGATTATGATATGAAACATGCAGATTTGGAAAAATCATTTGGAGTGAAGTTTCCTGGTTCAGGACTTAAATTTTGGTCCAGAGTCATAAAAGGGCATTGGAAGCGCAAATTTAAAAGGAAGGCTAAAAGGAGTGACATCTGTGCATCTGGTGTTGCTATCAAAAGAAGAATTCTTGAACGCAGTGCATTAGCAGCACATACTTACTTTTGTGATCAATCACATGGGAAGTTTGGGGAGGGAAGTTTCCATTTTATGAATCGTGATATGCATTTGGTAAAAAGTGAAGTTGACAAAATTGCAGAATCTGTTGCCAGTGGTGATGATAATAGAAGTAATGATGACAAGAATGGAACACAATCCACAGATCTGGGAATCCGGTCTCCTTCAGCAAATGAAAATGTTAACGGTCCATCAGATTATTTTAAAATTGTTAGTGATCAGACTCTACAGCCAAGAGAGAGTAAACATAAAAATTTGCAATCTAATGAGAATGCTGTAGAAAATGCTCATGCTAATAGCAGCACAGAGAAAAATGAGGAGTTGGGACTTCATGTTGCACACAGTCCAATCGATGATACTGTGACTGGGAGCCAAGGAGGTTTGGTACCTGAAGATTTGGTTTCTTTGAAGTCCAGGCCTGGGTTGGCAACAAATTCTCCAGTTCCATTAGAGCCCTTAATTGTGAAATTGGGCTTAGCCTCGTTTTTCAGAAATATTGAGGAGTTGATATCTGGCTTCCTATCTGGTTTCATTCAAAAGTTGAAGTCTGACATAGGTCTGAAAATTGAAGATATTGTTGCAGAACATGTAGATGGGATAGATGTAGATGGTCAGCATTCTGAAGGCCTCACTAAGATTCTTCCTGTTACATTAGATGCTGTCCATTTCAGAGGTGCAACTGTGATGCTACTTGCATATGGGGACAGGGAAGTTAGGGAGATGGAGAATGTCAATGGCCATGTGAAGTTTCTTAACCACTACACCCGTATAAATGTACAACTGAGTGGAAATTGTAAGACTTGGAGGTCAGGTGTTAGCGAAGATGGTGGCTGGTTGTTTGCCGAGGTTTTTGTTGACACTATTGAGAAGAAATGGCATGCTAATTTGAAAGTTGACAATCTTTTTGTTCCGCTGTTTGAAAGGATCCTAGAAATTCCAATTACATGGTCTAAAGGGAGGGCCAGTGGTGAGGTTCACTTGTGCATGTCAAAGTGTGAAACTTTTCCAAATCTTCATGGACAACTTAAAGTGACGGGGTTGAACTTCCAACTATTTGATGCCCCATCGTGTTTTTCTAACATATCGGCAAGTTTGTGTTTTCGTGGTCAAAGAATATTTTTACACAATACAAGTGGCTGGTTTGGCAGCATTCCGCTCGAAGCATCAGGAGATTTTGGCATTCATCCTGAGGAAGGAGAATTTCATCTCATGTGTCAGGTTCCTGGTGTTGAAGTGAATGCCTTGATGAGAACTTTCAATATGAAATCCCTCTTGTTCCCACTAGCAGGATCCATGACTGCTCTGTTTAATTGTCAAGGCCCACTGGATACTCCTGTATTTGTGGGTACTGGAATGGTTTCCAGGATGTTCTCTTCTTTACAGATTGACACTCCTGCATCTGTAGCATCTGAAGCACTTGCTAAAAGTAAAGAGGCTGGTGCACTGGCAGCATTTGATCGCATACCATTCTCATATGTATCTGCCAATTTTACTTTCAACACTGATAACTCTGTTGTGGATTTATATGGAATTAGGGCAAGCCTTGTGGATGGTGGTGAAATTCGAGGGGCTGGGACTGCATGGATAAGCCCAGAGGGTAAGGAGGATGACACAGCAATAGATGTGAACTTCTCTGGAAGTTTAGCCTTTGAAAAAATCATGCATCATTACATTCCAAGTTATCATAATCTGATGCCACTTGAATTAGGGACTTTACATGCAGAGACAAAACTTTCGGGATCTCTCTTAAGACCGAGGTTTGATATAAAATGGACTGCACCTACAGCAGAAGGGTCTTTTAGTGGTGCTAGAGGAGATATCATAATCTCACATGATTTCATTACTGTTAATTCTGCTTCAGCTGCACTTGATTTGTATATGAAAGCTCGAACATCTTATTCTGATGATTTTTCTCTTGAAAGAGAAGAGTTTCATGCACCAAGAGCCATTCCATTTACTGTTGATGGAGTTGAGTTTGACTTGCATATGCGTGGGTTTGAATTCTTCAGTTTGGTTACTACTTATACATTGGATTTTCCAAGGCCTTTGCTTCTGAAAGCAACTGGAAGAATCAAGTTTCAGGGAAAGGTTTTAGAACCTAGTTGCACTATGATGGAACGCAATTTTGACAAGAACAGGCAGCTTTTGCAAATGTTGGAGAAAGGAAGTGCAGATAGTCTTGTTGGTGAGGTTTCAATCTCTGGTCTCAAACTGAATCAATTGATGCTCGCACCTCAGCTGTCTGGGTTGTTGTTAGTTTCTCCTGAATGTATCAAGTTGGATGCCTCTGGTAGGCCTGATGAAAGTCTTGCAGTGGAGTTTGTTGGGCCACTACAACCCAGTGGTGAAGATGGTGTGAAAAGTGGACAACTGTTTTCCATTTCACTTCAGAAGGGGCAATTGAGGGCTAATGTAGGTTTCCAACAATGTCATTCAGCTAGCTTGGAGATATGGCATTTTCCACTTGATGAGCTGGAGCTTGCTTCTCTCCGGGGAACCATACAGAGGGCAGAAATCCAGCTTAATCTTCAGAAAAGAAAAGGACATGGAATCCTATCTGTACTTCAGCCAAAATTCAGTGGCATTCTCGGTGAAGCTCTAGATGTGGCAGCTAGGTGGAGTGGAGATGTTATCACTATTGAAAAAATCATTTTCGAACAAAGCTACAGTCATTATGAACTTCAAGGTGAATATGTGTTGCCTGGCACCCGCGATTGTAACCCTGTTGACAGAAAAGGAGATGGCTTTTTTAAAAGGCTATTGTCTGGGGATCTTGGCAGTGTTATCTCCTCAATGGGCAGATGGAGAATGAAACTCGAAGTTCCTAAAGCTGAGGTTGCTGAGATGCTTCCTCTTGCAAGGCTTCTCTCTCGAAGTACAGATCCTGCTGTTCTTTCAAGATCAAAGGATTCCTTTATCCAAAGTTTGCAGTCGGTGGGATTCTTTTCTACAAGCCCTCAAGAACTGCTTGAGTTAATAAAGGGGCATCATGGTCCCTCACATGATGTTGTTCTTGAAGATATAAGTCTGCCTGATTTATTTGAACTCAAAGGTTGCTGGCATGGCTCTCTTGATGCAAGTGGTGGAGGGAATGGAGACACCCTGGCAGAATTTGACTTTCACGGGGAGGATTGGGAATGGGGAGACTACAAAACTCAGCATGTCTTGGCAGTTGGTGCTTACAGTAATGATGATGGTTTTCACCTGGAGAAAATTTTCATCCAGAAGGATAATGCTACCATTCATGCTGATGGAACTTTGTTAGGACCTAAAACCAACCTTCATTTTGCTGTCTTAAATTTTCCTGTTAGTCTGGTCCCAACTGTAGTTCAGATCATTGAATCTACAGCAACGGATGTTGTTCATTCTCTGCGGCAATTGTTGGCACCAATTAAGGGTATCTTACATATGGAAGGAGATCTTAGAGGAAGTTTAACAGAACCGGAATGTGATGTGCAAATAAGGCTCCTGGATGGGGCCATTGGTGGAATAGATCTTGAACGGGCAGAAGTTGTTGCTTCTCTAACCTCAACCAGTCGTTTTCTATTCAATGCAAAATTTGAGCCTATAATCCAAAATGGTCACGTACTGATTCAAGGAAGTATTCCTGTTACTTTTGTTCAAAATAACAAGTTACAGCAAGAATTAGAATTAGGTAAGAGTGGGGGTACGTGGGTTCCTGATTGGGTGAAGGAGAAGAATAGAGGGACCACTGATGATGCCTGCAACAAGAAAGCTTCTAGGGACAGAAATGAGGAAGGTTGGAATACTCAATTAGCAGAAAGCCTTAAAGCTTTAAATTGGCAAATTTTAGATGTTGGAGAAGTCAGGGTTGATGCTGATATAAAAGATGGGGGAATGATGCTGGTAACAGCTTTATCTCCTTATGCCAATTGGCTTCATGGCAATGCTGATGTTGTGCTTGAGGTCAGAGGTACAGTTGATCAACCACTGCTTAATGGATATGCATCATTCCACAGGGCGTCAATATCATCACCAGTGTTCCGAAAGCCGCTAACCAACTTTGGTGGAACTGTTCACATGAAATCAAACAGGTTATCCATCACCTCACTGGAGAGTAGGCTAAGCAGAAAAGGAAAGCTGCTTGTAAAAGGGAACCTTCCTCTCAGAACCAGTGAGGCAGCCCCTGATGACAAGATTGAGTTGAAGTGTGAAGTTCTAGAAGTGCAGGCAAAAAATATTTTAAGTGGCCAGGTCGACTCCCAGATGCAAATAACTGGTTCCATATTGCAACCAATCATTTCAGGGAATATTAAACTTAGTTATGGAGAAGTATATTTGCCACATGATAGGCGAAGTGGTCCTGCTTCTAATAGATTTCCATCAAATCAGTCAGTGCTTCCTGCTCGTGGTGCTAGCCAAATTTCACGGTATTTTGGCTCAGGACCTGCTTCTTTGACAACCAAAATTTCTCAATCCTCTAGGCCTGACTACATGGCAGTCAATGAGTCAACTCACGTTGAAAAGGACATGGAGCAAGTGCAGACAAAACCACGTATAGAAATCTGCCTTAATGATTTAAAGCTTGTGTTTGGACCAGAGTTGAAGATAGTTTATCCTTTGATTCTTAAATTTGCTGTTAGTGGGGAGCTTGAGTTGAATGGTCTCACACATCCCAAATATATAAGACCTAGGGGCATACTTGTATTCGAGAATGGTGAAGTTGATCTCCTCGCAACACAGGTAAGGTTAAAACGGGAGCATCTAAATACTGCAAAGTTTGAGCCTGAGTATGGACTAGATCCAATGCTAGATTTAGCCTTGGTTGGATCTGAGTGGCAATACAGAATTCAACGTCGGGCTAGCAATTGGCTGGACCATGTGGAACAGGAACAGGATGCACTCTCACCTCATGAGACTGCCAGAAAATTCGAGAGTCAGTTAGCAGAATCCATTTTGAAAGGCGATGGTCAACTTGCATTTGAAAAGCTTGCAACTGCTACTCTTGAAAAATTAATGCCACGGTTAGAAGGGGAGGGAGAATTTGGCCGGGCTAGGTGGAGACTAGTGTACTCACCTCAGATTCCTAGCTCAGTTTCTGTTGATCCTATGGAAGATCCTTTCAGGTTACTTGCCAGTAATTTATCATTTGGTACAGATGTTGAACTCCAGCTTGGGAAACGTCTTCAGGCTAGAATGGTTAGGCAAATGGTGGAGTCAGAGATGGCAACACAGTGGACCTTGAGCTATCAACTAGCAAGTCGCTTGCATCTGCGCCTACAGTCCGGGCCAGGCCCATCCTCATGTATTCTTTGTGAATACTATGCTACATACTAG	6465	0.4241	MSTSFFGINLHAPLKGINGNHLERRHSPKSKRYVVSAKHGTPVRQAFSFCGQNVNLLRRHLVSASGSRLKCTREPPFSLNVRFLTPLWKEGLLLIRASVYTVVISGLCLLVWFGRNKAKGYVEANLLPSVCSVISEYIQRDIQFGKVRRITPLSVTLESCSFGPHKEEFSCGEALTVKLRFHPLASLRRGMFVVDAILSHPNVLVVQKKDYSWLGIPSTEGGSIKRHLSSEEGIDHRTRARRLAREEAAVQWTKERDDAAREAAEMGYFVSEQNCGPSQGDDLKEIASHSIGATNSSSFFCMNEGKHIHHCMDKGVDYDMKHADLEKSFGVKFPGSGLKFWSRVIKGHWKRKFKRKAKRSDICASGVAIKRRILERSALAAHTYFCDQSHGKFGEGSFHFMNRDMHLVKSEVDKIAESVASGDDNRSNDDKNGTQSTDLGIRSPSANENVNGPSDYFKIVSDQTLQPRESKHKNLQSNENAVENAHANSSTEKNEELGLHVAHSPIDDTVTGSQGGLVPEDLVSLKSRPGLATNSPVPLEPLIVKLGLASFFRNIEELISGFLSGFIQKLKSDIGLKIEDIVAEHVDGIDVDGQHSEGLTKILPVTLDAVHFRGATVMLLAYGDREVREMENVNGHVKFLNHYTRINVQLSGNCKTWRSGVSEDGGWLFAEVFVDTIEKKWHANLKVDNLFVPLFERILEIPITWSKGRASGEVHLCMSKCETFPNLHGQLKVTGLNFQLFDAPSCFSNISASLCFRGQRIFLHNTSGWFGSIPLEASGDFGIHPEEGEFHLMCQVPGVEVNALMRTFNMKSLLFPLAGSMTALFNCQGPLDTPVFVGTGMVSRMFSSLQIDTPASVASEALAKSKEAGALAAFDRIPFSYVSANFTFNTDNSVVDLYGIRASLVDGGEIRGAGTAWISPEGKEDDTAIDVNFSGSLAFEKIMHHYIPSYHNLMPLELGTLHAETKLSGSLLRPRFDIKWTAPTAEGSFSGARGDIIISHDFITVNSASAALDLYMKARTSYSDDFSLEREEFHAPRAIPFTVDGVEFDLHMRGFEFFSLVTTYTLDFPRPLLLKATGRIKFQGKVLEPSCTMMERNFDKNRQLLQMLEKGSADSLVGEVSISGLKLNQLMLAPQLSGLLLVSPECIKLDASGRPDESLAVEFVGPLQPSGEDGVKSGQLFSISLQKGQLRANVGFQQCHSASLEIWHFPLDELELASLRGTIQRAEIQLNLQKRKGHGILSVLQPKFSGILGEALDVAARWSGDVITIEKIIFEQSYSHYELQGEYVLPGTRDCNPVDRKGDGFFKRLLSGDLGSVISSMGRWRMKLEVPKAEVAEMLPLARLLSRSTDPAVLSRSKDSFIQSLQSVGFFSTSPQELLELIKGHHGPSHDVVLEDISLPDLFELKGCWHGSLDASGGGNGDTLAEFDFHGEDWEWGDYKTQHVLAVGAYSNDDGFHLEKIFIQKDNATIHADGTLLGPKTNLHFAVLNFPVSLVPTVVQIIESTATDVVHSLRQLLAPIKGILHMEGDLRGSLTEPECDVQIRLLDGAIGGIDLERAEVVASLTSTSRFLFNAKFEPIIQNGHVLIQGSIPVTFVQNNKLQQELELGKSGGTWVPDWVKEKNRGTTDDACNKKASRDRNEEGWNTQLAESLKALNWQILDVGEVRVDADIKDGGMMLVTALSPYANWLHGNADVVLEVRGTVDQPLLNGYASFHRASISSPVFRKPLTNFGGTVHMKSNRLSITSLESRLSRKGKLLVKGNLPLRTSEAAPDDKIELKCEVLEVQAKNILSGQVDSQMQITGSILQPIISGNIKLSYGEVYLPHDRRSGPASNRFPSNQSVLPARGASQISRYFGSGPASLTTKISQSSRPDYMAVNESTHVEKDMEQVQTKPRIEICLNDLKLVFGPELKIVYPLILKFAVSGELELNGLTHPKYIRPRGILVFENGEVDLLATQVRLKREHLNTAKFEPEYGLDPMLDLALVGSEWQYRIQRRASNWLDHVEQEQDALSPHETARKFESQLAESILKGDGQLAFEKLATATLEKLMPRLEGEGEFGRARWRLVYSPQIPSSVSVDPMEDPFRLLASNLSFGTDVELQLGKRLQARMVRQMVESEMATQWTLSYQLASRLHLRLQSGPGPSSCILCEYYATY.	2155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00870	2154	Pfam	TamB, inner membrane protein subunit of TAM complex	1747	1987	IPR007452	GO:0005886\|GO:0009306
	Seca4g00870	2154	Coils	Coil	1216	1236	-	-
	Seca4g00870	2154	MobiDBLite	consensus disorder prediction	432	464	-	-
	Seca4g00870	2154	MobiDBLite	consensus disorder prediction	477	495	-	-
	Seca4g00870	2154	PANTHER	EMBRYO DEFECTIVE 2410	74	2153	-	-
	Seca4g00870	2154	MobiDBLite	consensus disorder prediction	419	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00870	Seca-Chr4	14409767	14444339	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00870	-		-	gmx:100793039	3179.42