Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00845 ATGCCTCTAGGAGAAAGGGCAGGGGATAAGAGCGAGTCTCGCTACTGTGGTGTAGAGACAGAGTTCAACGATGACATGCCTCAAGTCCTCGCTTTCAATCTCTCATCTGGAGGCTTCGATTTTGTCATTGCTCCTCTGATGAATCCTTCTTATCGGCCAAGCTTAGTGCAAAAGGATAGTATGGGATCTGGTGCTCTTCCATTTGCTGGGTCAGACTTGGTCTTGAGCCCATCCCAGTGGAGTAGTCATGTAGTGGGAAAAATTAGCTCTTGGATAGATTTGGATTCTGAAGATGAAACCCTTAGGATAGATTCTGAAACTACTCTTAAACAAGAAATAGCTTGGGCTTCTCATCTCTCTTTACAGGCTTGCCTGCTTCCTGCCCCTAAAGGAACTTCTTGTGCTAATTATGCTAGGTGTGTTAATCAAATCTTACAGGGCCTGAGTAACATGCAGTTGTGGCTTAGGATTCCATTGGTCAAGCCTGATGATGACTCTATGGATACAAGCTCTGATACTTTGGTTGATTCCTGGGAAACATGGAATTCTTTTCGTCTGCTATGTGAGCATCATAGTCAACTCTCAGTTGCACTTGATATTCTGAGTACTCTGCCTTCAGCAAATTCACTTGGACGTTGGTTTGGGGAGTCTGTTAGAGCTGCTATACTAAACACTGATTCCTTCTTAACTAATGCTCGTGGATATCCATGCCTCTCCAAGCGCCACCAGAGGTTAATTACTGGTTTTTTTAACCATTCTATACAGATCATTATATCTGGAAACTCAGTTCATCCGAAACCAAGCGTGGATGCAAATGATTTTCATAAGCTTTCTGTTTCTGATTCACAAAGACATCCCTTGCGGCCATATCTGGACTATGTTGGATATCTGTACCAAAGAATGGATCCTCTTCCTGAGCAAGAACGTTTTGAGCTTGGATACAGGGACTTTTTACAGTCACCCTTGCAACCTCTGATGGATAATTTAGAGGCTCAGACTTATGAGACTTTTGAGAAAGATGCAGTGAAATACATTCAGTACCAAAGAGCAATTAGTAAAGCATTGCTGGACAGGATTCCTGATGAGGAGGCATCTAGTAAAACCGTTGTGTTGATGGTTGTTGGAGCAGGACGTGGGCCTCTTGTGCGGGCATCATTACAGGCTGCTGAAGAAACTGGGCGGAAGCTAAAAGTTTATGCCGTTGAAAAGAATCCAAATGCAGTTGTTACTCTCCATGCATTACTTAAGTTAGAGGGATGGGAGGATACTGTTAGCATAGTCTCATGTGACATGCGTTATTGGGATGCCCCTGAAAAAGCTGACATATTGGTTAGTGAATTGCTAGGTTCTTTTGGTGACAATGAACTGTCTCCTGAGTGCCTTGATGGAGCACAGAGATTTCTAAAGCCCGATGGAATTTCAATACCATCTTCGTACACAAGTTTCCTTCAACCAGTGACAGCTTCGAAGTTACATAATGATGTTAAGGCACATAAAGACCTTGTACACTTTGAAACTGCTTATGTTGTAAAAATACACAATGCAGCTCGACTTGCACCATCTCAACCCGTTTTTACGTTTACTCATCCAAAACACTCTGATAAAGAAAGCAATCAGCGCTATAAAAAGTTGTATTTTGTGATACCTAATGACACTGGGTCAGCCATGGTACATGGATTTGCTGGCTACTTTGATGCAACTCTTTACAAAGATGTGCATCTTGGAATTGAACCTTCAACAGCCACACCAAACATGTTCAGTTGGTATTGA 1770 0.4249 MPLGERAGDKSESRYCGVETEFNDDMPQVLAFNLSSGGFDFVIAPLMNPSYRPSLVQKDSMGSGALPFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDETLRIDSETTLKQEIAWASHLSLQACLLPAPKGTSCANYARCVNQILQGLSNMQLWLRIPLVKPDDDSMDTSSDTLVDSWETWNSFRLLCEHHSQLSVALDILSTLPSANSLGRWFGESVRAAILNTDSFLTNARGYPCLSKRHQRLITGFFNHSIQIIISGNSVHPKPSVDANDFHKLSVSDSQRHPLRPYLDYVGYLYQRMDPLPEQERFELGYRDFLQSPLQPLMDNLEAQTYETFEKDAVKYIQYQRAISKALLDRIPDEEASSKTVVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHALLKLEGWEDTVSIVSCDMRYWDAPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFLQPVTASKLHNDVKAHKDLVHFETAYVVKIHNAARLAPSQPVFTFTHPKHSDKESNQRYKKLYFVIPNDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWY. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00845 589 Pfam PRMT5 TIM barrel domain 38 300 IPR035247 -
Seca4g00845 589 Gene3D - 14 307 - -
Seca4g00845 589 Gene3D Vaccinia Virus protein VP39 310 477 IPR029063 -
Seca4g00845 589 Gene3D - 478 589 - -
Seca4g00845 589 Pfam PRMT5 arginine-N-methyltransferase 306 475 IPR035075 -
Seca4g00845 589 Pfam PRMT5 oligomerisation domain 478 589 IPR035248 -
Seca4g00845 589 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 333 588 IPR029063 -
Seca4g00845 589 PIRSF PRMT5 3 589 IPR007857 GO:0006479|GO:0008168|GO:0035246
Seca4g00845 589 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 7 589 IPR025799 GO:0016274|GO:0018216
Seca4g00845 589 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 318 589 IPR025799 GO:0016274|GO:0018216
Seca4g00845 589 FunFam Protein arginine N-methyltransferase 14 307 - -
Seca4g00845 589 FunFam Protein arginine N-methyltransferase 5 310 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00845 Seca-Chr4 13932644 13944833 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00845 K02516 - gmx:100782245 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00845 4 13932644 13944833 Seca4g00845 4 13932644 13944833 ECH