Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00844 ATGAGTAGACCAACGACACGGAGTAAAAATAAAAGACAGAGGCAGGGGGATGATGGTGCCAGCACTACTGAAATATGGAGGAAAATTCACCAAACAGGTGTGGTTACTGAGGATGATATGAATCAACTGTATATGATTTGGAAGGCAGTTTGTTCAGGCTGTCGTGTCAATGCCAAAGATAACCCAAACTGCTTCTGTGCGTTGGTTCCACCTCCAAATGGATCCCGGAAGTCTGGCTTATGGCAGAAGATGTCAGATTTTGAGGAAAGTCTTGGCCCTGATCCAGCCAAGGATCTTCGTGCTTCTGCTAATTCTCCTGCAGGTCTGACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTCCAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATATTTTCTGTAGAGCCAGATGTTTTACAACAACAGCCAGTGTTAGACCAACTGGTTCGACTTTTTGTGCAGCTGCATGTTAGTAAAATGGCTTTTATAGATTCTTCTCCCTTTGTAAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTTACATTGCTTCTGTCATTGCTTGAACGTTGTCTGAGCCATTCCAAAGTTCCCAAGGCAAGAACAATTGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACTACGTGCTCGCAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAGTTGGAATTGAATGTCAATGGATTGAAAAGTTTAGATGAGAGCCTGGATGATTACCTCACTGTTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGAGTCGTGTAAAACAAGAGTTGATGCTAGTCGCAGCATCAAGCTGTGTACATTGCCTGATGTTCTTAATTTTCAACTTAAACGTTGTATCTTTCTTCCAAAGACTACAACGAAGAAGAAAATTACTTCTGTATTTTCATTTCCTGCTGAACTTGACATGAGGCATAGACTGCCTGAGTTATCTCAGTCTGATTTGGTATATGACTTGTCAGCTGTACTCATTCACAAGGGAACTGGTGTTAATAGTGGCCATTACATTGCTCACATCAAGGATGAAAACACCGCGCAGTGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTCGTCATCCATTTGGTGAAGGATCTTCAAGTTCTACTACTAAATTCATAAAGACAGATGCTATTCACCTGGACTGCTCTGAAGCAAGGATAGCTGAAAGTAATGGAAATGGGTTAAACGCCACTCATTCACAATCTTCGCATATGGAGACATTTTCATCTAGTGATGCATACATGCTGATGTACCATCTTAAACATAAAAAAAGTGTTGGTGAAAATGGGGGTATAATTTGTGGTGCTAACCAGAAAGAAAGAGAGGGTGTTGTAGTTGCTGTGCAAAATGGTGCTCATCTTCCTTCTCATCTTTTTGAAGAGATTCAAAGTTTCAATGACTCATATCTTGATGCTTGTCAACAATACAATCACAGGAAGGAGTTAGAATTGAGTCGTATTAATGAGAGGAGAAAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTTTCCAACCATTGGAGCAACCATTTTATTGGATTTCTAGTGACTGGCTTCGCCACTGGGCTGATAACATTTTTCCAACTTCTATTGACAACACAGTCATCCAGTGTTCACATGGAAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGGCTGTCTGCTAAAGCATGGGATAAGTTGTTCTCCAAGTATGGTGGGAGTCCAGCACTGTCTCATGATGACCATTGTTGGGATTGCCTGATTCATGGGGCTCAGACTGTGGTGTCAGCTGACACTTACCGGGATAGAAGAGAATCCATGAAGACACTTGCACGGGATATTCTAGATGGTAACTGTCTAGATGGAAAGTATTACATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACGGCAGCCATTAGTTGTTCACATGGGCAATTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGAGTTTTTGGCTATTTTTATATGAAGATGCTGTTTCTGTAAAACCTGATGATCCTTTAGGTGGCCCAACTTTTCCTTCAGATTCCAAAGAGTGTTCCCAATGCAGTAATGAATTATCTGAAGTAGCATGCTTTGAGGACTCTTTGAGATTAGTTAAACAAAGGCAACGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTATGCCACTCTCAGTGCATTGCAAGTATTTCTTGGTGCCTTCTTCATGGATTTCAAAATGGAGAAATTACATTAGTCCAACATTCAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCACTGATGTGTGAAAAGCACTCGCAACTTGTTGAAAGACTTCCTCAACTGGTTTTCAGACGTGGTGCTATAATCCAGAGAGAATCTTCTGCAGGTGGCTTAACCATCATATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGCGGTATTGAGACCAAAGGAATATCTGCAACAATTGATCATATTAATGATTCAGAGAACGTTTTGACCGGATCCAGTGATGAGATGCTGATGTGTGAGGATCAGTTACGCACGGGGGATAAAATGAATAATGAAAATGGAACTGGACAAATTTTGATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAGAAACTTAACTACTGCAATGAGGAAATATCTGTAATTCTTGTTCGTGGTAAAGAGGTACCCAGATCAATCTTGGAGGCTTCAAAGGGATTCACTGAAACAGATCGGCGGGTTTCCAAGCGCTCCCGGAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCCTTATACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATATTACATAAAGGTGATAGGACAATTGATATTGATGATGAATGGACTACCCTTGCAGATGTAAACATATTTGCTGGAGACCTGATTATAGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGCTGTGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGTGGAACACTTCTTACAGCAGACGTTTCATCACAGGCTGTTTAA 3252 0.4124 MSRPTTRSKNKRQRQGDDGASTTEIWRKIHQTGVVTEDDMNQLYMIWKAVCSGCRVNAKDNPNCFCALVPPPNGSRKSGLWQKMSDFEESLGPDPAKDLRASANSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEPDVLQQQPVLDQLVRLFVQLHVSKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVNGLKSLDESLDDYLTVEELHGDNQYFCESCKTRVDASRSIKLCTLPDVLNFQLKRCIFLPKTTTKKKITSVFSFPAELDMRHRLPELSQSDLVYDLSAVLIHKGTGVNSGHYIAHIKDENTAQWWEFDDEHVTNLGRHPFGEGSSSSTTKFIKTDAIHLDCSEARIAESNGNGLNATHSQSSHMETFSSSDAYMLMYHLKHKKSVGENGGIICGANQKEREGVVVAVQNGAHLPSHLFEEIQSFNDSYLDACQQYNHRKELELSRINERRKEVRSVLAEAPFQPLEQPFYWISSDWLRHWADNIFPTSIDNTVIQCSHGKVPVSKVTSMKRLSAKAWDKLFSKYGGSPALSHDDHCWDCLIHGAQTVVSADTYRDRRESMKTLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCSHGQLMPEQAPGAKRVLIPESFWLFLYEDAVSVKPDDPLGGPTFPSDSKECSQCSNELSEVACFEDSLRLVKQRQRQNHEKLFQAKSMPLSVHCKYFLVPSSWISKWRNYISPTFKNSDKPETLDGVIDSLMCEKHSQLVERLPQLVFRRGAIIQRESSAGGLTIISENDWKCFCEEWGGIETKGISATIDHINDSENVLTGSSDEMLMCEDQLRTGDKMNNENGTGQILIKTCPEVCESCIGERESCELMQKLNYCNEEISVILVRGKEVPRSILEASKGFTETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRTIDIDDEWTTLADVNIFAGDLIIVRDSEIHENRDIADELCCDKMDLQHTEEGFRGTLLTADVSSQAV. 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00844 1083 Gene3D - 506 605 IPR035927 -
Seca4g00844 1083 SUPERFAMILY DUSP-like 518 606 IPR035927 -
Seca4g00844 1083 Gene3D - 972 1043 - -
Seca4g00844 1083 SMART dusp 532 603 IPR006615 GO:0004843
Seca4g00844 1083 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Seca4g00844 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Seca4g00844 1083 Gene3D Cysteine proteinases 94 450 - -
Seca4g00844 1083 SUPERFAMILY Cysteine proteinases 105 450 IPR038765 -
Seca4g00844 1083 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Seca4g00844 1083 Gene3D - 746 865 IPR035927 -
Seca4g00844 1083 ProSiteProfiles DUSP domain profile. 621 728 IPR006615 GO:0004843
Seca4g00844 1083 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 74 448 - -
Seca4g00844 1083 MobiDBLite consensus disorder prediction 10 24 - -
Seca4g00844 1083 SUPERFAMILY Ubiquitin-like 976 1042 IPR029071 -
Seca4g00844 1083 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g00844 1083 CDD Ubl_USP48 973 1074 IPR044743 GO:0004197|GO:0004843|GO:0016579
Seca4g00844 1083 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Seca4g00844 1083 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Seca4g00844 1083 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
Seca4g00844 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Seca4g00844 1083 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Seca4g00844 1083 FunFam Ubiquitin carboxyl-terminal hydrolase 26 505 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00844 Seca-Chr4 13918304 13928806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00844 105 385 Miscellaneous Gene Families AT4G31670 28.904 1.13e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00844 - - gmx:100815770 1952.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00844 4 13918304 13928806 Seca4g00844 4 13918304 13928806 ECH