Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00834 ATGGGTTTGAGAAACTCCTCTGTTTTGTGCTTGGCACTTTTGCTTGCTTTCTCTTCAACCATTCACGGCTTAGACATCACAAAACAGTTATCACAATACCCTGAATTCGAATCGTTTAACAAATACCTCACCGAAACCAAGCTGGCAGAGCAAATAAACGGACTTAAAGCCGTTACGGTCCTTGCAATTGACAACAAAGCATTGTCTTCACTCTCCGGCAAATCCCCTGACGCCGTTAAGGCAATCATTGGTAACCACGTTTTGGTTGGTTATTACGATGAGAAGAAACTCGTTGAAGCTCAAGGGAGTCATACCCAATTGGAAACTCTTTCCCCTGTTTCAGGTCCTGCTAAAAGCATCTTGGTTGCTCTTATCAATGAGGGAGAGGTTGCTTTTAGTTCTGCTGTTAAGGGTTCCCCTTTTGATACCAAGCTTGTATCAACCGTTAGCACTCAACCCGACACCGTTTCGATTCTTCAGGTCACTCAACCCATTGTGGCACCTGGTGTTGAATCTTCAACATCTTCTTCTTCTGGTAGTGGAAAGGCATCGATTGCTGAGTCACCTAATGCACCTGCACCAGGCCCATCTAGCACCTCTTCTCGTGTTCATGTGAGCTTCTTCGTTGGTGCAGTTATGGTCTTGGCTTCCCTTTTTGTTTCCTTGTAA 669 0.4499 MGLRNSSVLCLALLLAFSSTIHGLDITKQLSQYPEFESFNKYLTETKLAEQINGLKAVTVLAIDNKALSSLSGKSPDAVKAIIGNHVLVGYYDEKKLVEAQGSHTQLETLSPVSGPAKSILVALINEGEVAFSSAVKGSPFDTKLVSTVSTQPDTVSILQVTQPIVAPGVESSTSSSSGSGKASIAESPNAPAPGPSSTSSRVHVSFFVGAVMVLASLFVSL. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00834 222 ProSiteProfiles FAS1/BIgH3 domain profile. 23 165 IPR000782 -
Seca4g00834 222 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6 182 IPR033254 -
Seca4g00834 222 SUPERFAMILY FAS1 domain 30 113 IPR036378 -
Seca4g00834 222 MobiDBLite consensus disorder prediction 169 198 - -
Seca4g00834 222 Pfam Fasciclin domain 35 109 IPR000782 -
Seca4g00834 222 Gene3D FAS1 domain 24 168 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00834 Seca-Chr4 13847996 13848664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00834 - - gmx:100816826 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00834 4 13847996 13848664 Seca4g00834 4 13847996 13848664 ECH