Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00830 ATGGAAGGGTTGGGTTCATCTTCTTCATCGGCGGCAATAGCACAGCAAACATGGGAGTTAGAGAACAACATAATCCCAATGGACACTCCCGCAGACGATTCGATCTTCTACTACGACGAGGCAGAGCAGAACGAGTTCCAGCGCGAGAAGCCATGGACCAACGACCCTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCACTCCTCAAGATGGTTGTCCACGCGCGCTCCGGCGGCACCATCGAAGTCATGGGTCTCATGCAGGGCAAAACCGATTCCGACGCCATCATCGTCATGGATGCCTTCGCTTTACCCGTCGAAGGCACCGAAACCCGTGTCAATGCCCAAGCTGATGCATACGAATACATGGTCGATTATTCTCAGACCAACAAGCAGGCAGGGCGGTTAGAAAACGTTGTGGGATGGTACCATTCTCATCCTGGTTACGGTTGCTGGCTTTCGGGCATTGATGTTTCCACGCAGATGTTGAATCAGCAATTTCAGGAACCCTTTCTTGCTGTTGTTATTGATCCAACTAGGACTGTTTCTGCTGGAAAAGTTGAAATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCAGATGAACCTATTTCTGAGTATCAGACAATACCTCTCAATAAGATTGAAGATTTTGGTGTTCACTGTAAACAGTATTATGCCTTGGATATCACTTACTTTAAGTCCTCTCTTGATTCACACCTTTTGGATCTGCTATGGAACAAATATTGGGTGAATACACTATCATCTTCTCCTCTGTTGGGTAATGGAGACTACGTTGCTGGACAAATCTCAGATTTAGCTGAAAAACTAGAGCAAGCAGAGAATCAGTTGGCGCACTCGCGCTTTGGGCCACTAATAGCACCCGCACCTAGAAAGAAAGAAGAGGAATCTCCACTTGCTAAGATCACCCGCGATAGTGCAAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCACAGGTAATCAAGGACATTCTGTTCAACTCTGTTCATCAAGCAAACAGGTCTCGCACAGAAACATCTGGTCCTGAACCAATGATTGAAAGCTGA 1080 0.4704 MEGLGSSSSSAAIAQQTWELENNIIPMDTPADDSIFYYDEAEQNEFQREKPWTNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDSDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPAPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRSRTETSGPEPMIES. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00830 359 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 48 346 - -
Seca4g00830 359 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 59 170 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca4g00830 359 ProSiteProfiles MPN domain profile. 62 199 IPR037518 -
Seca4g00830 359 CDD MPN_RPN11_CSN5 51 323 - -
Seca4g00830 359 Pfam Cop9 signalosome subunit 5 C-terminal domain 258 338 IPR040961 -
Seca4g00830 359 SMART pad1_6 61 198 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca4g00830 359 FunFam COP9 signalosome complex subunit 5 8 264 - -
Seca4g00830 359 SUPERFAMILY JAB1/MPN domain 61 198 - -
Seca4g00830 359 Gene3D Cytidine Deaminase, domain 2 6 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00830 Seca-Chr4 13813224 13817726 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00830 K09613 - gmx:100784909 687.567