Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00792 ATGGATCACAAGGTCGATCTTAGCGCTCCTCATTCTATGGGAACCACTATCATCGGTGTTACTTACAACGGCGGTGTCGTTCTTGGAGCCGACTCTCGAACCAGCACCGGAGTATATGTTGCTAACCGAGCATCAGATAAAATCACACAGCTCACTGATAATGTCTATGTGTGTCGCTCTGGATCGGCTGCAGATTCACAGGTTGTCTCTGACTATGTGCGCTACTTCCTCCATCAACACACGATACAACTTGGACAACCTGCAACAGTCAAAGTTGCGGCAAACCTTGTGCGGCTTCTCTCATATAACAACAAGGTTCAACTTTAA 327 0.4709 MDHKVDLSAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKVQL. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00792 108 Pfam Proteasome subunit 13 101 IPR001353 GO:0005839|GO:0051603
Seca4g00792 108 PANTHER METALLOPROTEASE TLDD 5 106 IPR023333 -
Seca4g00792 108 ProSiteProfiles Proteasome beta-type subunit profile. 14 108 IPR023333 -
Seca4g00792 108 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Seca4g00792 108 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 12 108 IPR029055 -
Seca4g00792 108 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 105 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00792 Seca-Chr4 13263875 13266794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00792 K02738 - gmx:100793551 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00792 4 13263875 13266794 Seca4g00792 4 13263875 13266794 ECH