Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00784 ATGTCTTCATCTTATCTTCCTGCCTCAACAGATTCAATTGCTCTGGCTCTGGAGGCCAAAGACCCGTCTGATGCCATCTCCATTCTTTATCGTGTACTTGATGATCCTTCTTCTTCACCGGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAACCTCACTGACCTTCTCAGGCAAGAAAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCCTTCTTCTCCTTGATTCCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCGGTTGCAAAAATACCTGGGACATCTGATCTACAAATTGCACTCTGTAAAGAAATGGTGCAATGGACACGTGCTGAAAAGCGCACTTTTCTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCGCTTTTGATGGAAAATAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTGAAGGAGGTTAGGAGATTAGATGACAAGCTTCTTCTTGTAGACATAGACTTACTGGAAAGCAAGCTACACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGTGCCATTGATCTGCAGAGTGGAATACTTCACGCTGAGGAGAAGGATTATAAAACTGCATATAGCTATTTCTTTGAAGCCTTCGAGTCTTTCAATGCTCTGGAAGACCCCAAGGCTGTTTTTAGCTTGAAATATATGTTGTTGTGTAAGATCATGGTGAGTCAAGCTGATGACGTGGCTGGAATTATTTCTTCTAAAGCAGGCCTGCAATATGTTGGGCCTGACCTGGATGCAATGAAAGCTGTTGCTGATGCTCATTCTAAGCGATCCCTTAAGTTATTTGAAATTGCTTTGCGGGACTACAAGTCACAGTTAGAGGAAGACCCAATTGTCCACAGGCACCTATCATCCCTGTATGATACTCTTATGGAGCAAAATCTTTGTAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACATATCGCTGAGCTTATTGAACTTCCCATTGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTTGTTATATTTGACGATCCCAAGACTGATGCAATATATCCTGCAACTTTAGAGACCATTTCCAATATTGGGAAAGTCGTGGACAGTCTTTATGTTAGATCTGCCAAGATAATGGCATGA 1269 0.4374 MSSSYLPASTDSIALALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFEIALRDYKSQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00784 422 Gene3D - 46 421 - -
Seca4g00784 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Seca4g00784 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 40 418 - -
Seca4g00784 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
Seca4g00784 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 16 128 IPR040773 -
Seca4g00784 422 Coils Coil 126 146 - -
Seca4g00784 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Seca4g00784 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Seca4g00784 422 Pfam PCI domain 285 386 IPR000717 -
Seca4g00784 422 SUPERFAMILY TPR-like 129 325 IPR011990 GO:0005515
Seca4g00784 422 SMART PCI/PINT associated module 143 319 - -
Seca4g00784 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00784 Seca-Chr4 13141232 13142500 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00784 K03036 - gmx:100780845 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00784 4 13141232 13142500 Seca4g00784 4 13141232 13142500 ECH