Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00781 ATGGGTATAACAGAAGCATGTTCCAGGTTCATTGGGGACTTTTTACAAGCATTCAAATTCTCACCACCAAGTTCAATATCTCACCTTGATCAACCAATTTGTAAGCCACAGAATATGCTCAAACTTGATGAGAAGATGGTTGGTGCTCTTGTCACTGTCTTTGGCATGGAAACCAATGGAAGAATCAAGAAGGAAAATGCAAGACAGGTGGTGGAGAAGCTTGGTTTGATGTATGGTTCTGAGGATGATAAGCTTTCAGGGTTTGAGTTACCCTGTGAGGGTGGGTTACTAGATGATGAAGTGCCTGTAGAAGAGGTTCTTGGTGAGTTGGAGGACATGTCAAAGCGCAGTGAGTTGTTAAGAGAAGCCTTCAAAATCTTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGATAAAGGGTGGGATATGAATACAATTGAGAAGATGGTGAAGGTTGTGGATTTGAACTTTGATGGAAAGGTTGATTTTGGAGAGTTTGAATTGATGATGGGATAG 552 0.4185 MGITEACSRFIGDFLQAFKFSPPSSISHLDQPICKPQNMLKLDEKMVGALVTVFGMETNGRIKKENARQVVEKLGLMYGSEDDKLSGFELPCEGGLLDDEVPVEEVLGELEDMSKRSELLREAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNTIEKMVKVVDLNFDGKVDFGEFELMMG. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00781 183 CDD EFh 120 178 IPR002048 GO:0005509
Seca4g00781 183 ProSiteProfiles EF-hand calcium-binding domain profile. 153 183 IPR002048 GO:0005509
Seca4g00781 183 Coils Coil 103 123 - -
Seca4g00781 183 SUPERFAMILY EF-hand 49 182 IPR011992 -
Seca4g00781 183 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Seca4g00781 183 PANTHER CALCIUM BINDING PROTEIN 114 182 - -
Seca4g00781 183 Pfam EF-hand domain pair 119 182 IPR002048 GO:0005509
Seca4g00781 183 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Seca4g00781 183 Gene3D - 97 183 - -
Seca4g00781 183 SMART efh_1 157 183 IPR002048 GO:0005509
Seca4g00781 183 SMART efh_1 119 147 IPR002048 GO:0005509
Seca4g00781 183 FunFam Calmodulin A 94 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00781 Seca-Chr4 13096151 13096702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00781 19 182 EF-hand Containing Proteins AT5G44460 37.143 2.84e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00781 - - gmx:100527700 285.804