Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00765 ATGGGTTATATTCAATATGGAAGACACGGTCTAAGGCAGATATTTAGATTTAGAAATGCCACTGATGTGGTCAGAATCTCCAGGAGGTGGCAGTTGAGGTCTGAAGGGACTGCTTTATCCTCCCATTCCCCTTTACTTGGGAAGAGTCTGTATTCCACTACTGCTGATGCCAGAATAGTGCAGGACCTTCTGGCTCAAGTGGAGAAGGATAGGCTGAGAGAGAAAAATGAGAGAATAAGGATTGGTTTGGACACCGCGGATATTGATGCTGAGTGTGAAGAGGACTACATGGGTGTGGGGCGTCTCATTGAGAAGCTTGAAAAGGAGAAGCTCAAGGACTCCCCTGACTTAAATCGCTATGAAGAGCCAACTGATTCTGACAGCGATGAAGAGGACAGTGAGGCCCACCAGAAAAAGTTTGATGATTTTGAGAGGAAGTTCAAGAAGCACGAAGACTTACTCAAGAACTTCACCGAGGCCGAAACACTCGATGATGCTTTCAAGTGGATGACCAGAATTGACAAGTTTGAAAACAAGTACTTCAGGCTCCGTCCTGAGTACAGGGTTATCGGGGAGCTCATGAATCGCCTCAAAGTAGTAACTGAGCAAAAAGATAGGTTCATTCTGCAGCACAAACTTAATAGGGCCTTGAGATTGGTGCAGTGGAAAGAAGCTTATGATCCTGATAACCCTGCCAATTATGGCGTCATTCAACATGAACAGGTGGGGCCTTCTGTGGATGCCCTGCAAAATTCTGGCTTTGAAAAGGAGAAGCAAATCGAAGAAGGAGAAGGAGAAGGAGATAATGCTGCTGCTGCTGATGATGAAGAAGAGTTTGATGACATGAAAGAAAAAGACAACATACTACTGGCCAAACTTGATGCTATTGACAAGAAACTAGAGGAGAAGCTAGCAGAACTTGAGTATACATTTGGAAAGAAGGGAAAGGCTCTAGAGGAAGAGATCAGAGATCTTGCAGAGGAGAGAAATGAGTTAACTGAGAAGAAAAGAAGGCCTCTTTATCGGAAGGGCTTTGATGTAAAATTAATAGATGTGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTTAAGTACACTGCTATGTTAGCATGTGGCAACTACAATGGTGTTGTTGGTTTTGCAAAAGCCAAAGGCCCTGCCATTCCAGTTGCCCTTCAGAAGGCATATGAGAAGTGCTTTCAGAATTTGCATTATGTAGAGCGACATGAGGAGCATACAATTGCACATGCAGTACAAACATCTTTTAAGAAGACCAAGGTGTATCTCTGGCCTGCTTCCACTGCAACTGGCATGAAAGCTGGCAGAATAGTCCAAACCATACTGCATCTAGCTGGTTTTAAGAATGTCAAGTCGAAGGTGGTTGGTTCCAGAAATCCTCACAATACAGTTAAGGCTGTTTTCAAAGCACTTAATGCGATTGAAACGCCAAGGGATGTCCAAGAGAAATTTGGCCGGACTGTGGTTGAGAAGTATCTGTTATGA 1509 0.4387 MGYIQYGRHGLRQIFRFRNATDVVRISRRWQLRSEGTALSSHSPLLGKSLYSTTADARIVQDLLAQVEKDRLREKNERIRIGLDTADIDAECEEDYMGVGRLIEKLEKEKLKDSPDLNRYEEPTDSDSDEEDSEAHQKKFDDFERKFKKHEDLLKNFTEAETLDDAFKWMTRIDKFENKYFRLRPEYRVIGELMNRLKVVTEQKDRFILQHKLNRALRLVQWKEAYDPDNPANYGVIQHEQVGPSVDALQNSGFEKEKQIEEGEGEGDNAAAADDEEEFDDMKEKDNILLAKLDAIDKKLEEKLAELEYTFGKKGKALEEEIRDLAEERNELTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAIPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSFKKTKVYLWPASTATGMKAGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00765 502 Coils Coil 290 310 - -
Seca4g00765 502 Pfam Ribosomal protein S5, C-terminal domain 424 491 IPR005324 GO:0003735|GO:0005840|GO:0006412
Seca4g00765 502 Coils Coil 315 338 - -
Seca4g00765 502 MobiDBLite consensus disorder prediction 114 136 - -
Seca4g00765 502 Coils Coil 140 160 - -
Seca4g00765 502 ProSiteProfiles S5 double stranded RNA-binding domain profile. 345 408 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca4g00765 502 Pfam Ribosomal protein S5, N-terminal domain 345 409 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca4g00765 502 PANTHER RIBOSOMAL S SUBUNIT 124 498 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca4g00765 502 SUPERFAMILY Ribosomal protein S5 domain 2-like 414 492 IPR020568 -
Seca4g00765 502 MobiDBLite consensus disorder prediction 258 278 - -
Seca4g00765 502 FunFam 30S ribosomal protein S5 410 501 - -
Seca4g00765 502 SUPERFAMILY dsRNA-binding domain-like 340 410 - -
Seca4g00765 502 Gene3D - 410 499 IPR014721 -
Seca4g00765 502 Gene3D - 295 406 - -
Seca4g00765 502 FunFam 30S ribosomal protein S5 295 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00765 Seca-Chr4 12818682 12823848 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00765 K02988 - gmx:100800084 709.138