LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00762	ATGGCTCCACCACCACCTCAGTCTCAGCGATCTCCCTCGCCGTCGCAACCATCCGGGAAGAGTGAAGTTTCCGATTTGAAATTACAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCGGGTGTTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTAATCTCCAACATGACTATAGGTATTGACGTCTCATCTCTCTTTGGTGAGATGGTAATGTGCTCGGCAACATCAGACATTGTTTTGAAGAAAATGTGCTACCTATATGTTGGAAACTATGCAAAGGTCAATCCTGATCTTGCTCTCTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCACTCCGAGTGGCAAACTTGGTGGAGTATTTGGTTGGACCATTAGGGTCTGGGTTGAAGGACAGTAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAGCTTCCACATGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTGATGCTTAATGACCCGGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTGCAAGAAATTTGGACATTAGAGTCAACCACCTCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTGCTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTCTGCTGGAATTGGTAGGCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTATAAAAGTATTTCTTCAGTTGACTTTATCCATGGCTGATGTTCATCAGCAGGTGTATGAGCGTATCAAAGCCCCTCTTTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAATTTTAAGCCACCTGCATCTCTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTACAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGATATTCCAATCGCAAGGGAGTCAATTCGGGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTACAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGCCAGGATTGTATTGCTGTCGTTGGGAATATCAGTAGCAAAAATGTTCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAGAGTCTTATTGAAAATTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGCTATGAAGTGTTTCTTTAAGAGACCCCCTGAGACTCAGAAAGCATTAGGAGCTGCACTGGCTGCTGGTCTTGCTGATTTTCACCAGGATGTTCATGATCGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCAGTGGCAGAGAGTGTGGTGAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAGAGCAGTGAAGTCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAAAGCTGTATATTCTGTCAAACTAACAATAGCAAATTCCTGCAGCCTTCTTACATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTTCAGATGAACTTGGAAATTTATCCATTAGTGCAGAATCTGGAGATTCTGTTGTTCCAGCTCAGAGAGTGGAGGCAAATGACAAGGATCTGCTTCTAAGTACCACAGAAAAAGAGGAAGGTAGAGAACCTGGTAGCAATGGTTCTGCCTATAATGCTCCATACTATGATGGTTCAGCTGCCCCATCTGCAACTTCACAACCGCTTGCAGATTTGGCATTTTCAAGTACCGGCGTAACTAGTCAAGCTCCAGCATCTAGCCTGGCAATTGATGATCTGCTTGGTTTAGATTTCCCAGTTGGGGCTGCAGCTACACCTTCACCTCCTCCATTGAGCCTCAATCCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTGCCAATATCCCTATCAGAGGAATATTCTTTAAGTCCTCAAGGAATTGCATCTTTGACAGCACCCCATGCACTCCTCCGGCACATGCAGAGTCATTCAATACACTGCATTGCATCCGGTGGCCAGGCTCCTAACTTCAAGTTCTTTTTCTTTGCTCAAAAAGTGGAAGAAGCATCAATGTTTCTTGTAGAGTGTATAATCAACACATCGTCAGGCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCAACTTTATTCAAATCAGCCTTGTCCAAATTTGGTTTACCATGA	2580	0.426	MAPPPPQSQRSPSPSQPSGKSEVSDLKLQLRQLAGSRAPGVDDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDSNSYVRMVAVIGVLKLYHISASTCIDADFPATLKHLMLNDPDTQVVANCLSALQEIWTLESTTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLLLELVGKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLIENWDEEHSAEVRLHLLTAAMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKSCIFCQTNNSKFLQPSYMFTDKEHRGTFEFSDELGNLSISAESGDSVVPAQRVEANDKDLLLSTTEKEEGREPGSNGSAYNAPYYDGSAAPSATSQPLADLAFSSTGVTSQAPASSLAIDDLLGLDFPVGAAATPSPPPLSLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPQGIASLTAPHALLRHMQSHSIHCIASGGQAPNFKFFFFAQKVEEASMFLVECIINTSSGKSQIKIKADDQSSSQAFSTLFKSALSKFGLP.	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00762	859	SUPERFAMILY	ARM repeat	31	597	IPR016024	-
	Seca4g00762	859	MobiDBLite	consensus disorder prediction	656	670	-	-
	Seca4g00762	859	FunFam	Beta-adaptin-like protein	728	857	-	-
	Seca4g00762	859	Gene3D	-	728	857	IPR012295	-
	Seca4g00762	859	MobiDBLite	consensus disorder prediction	1	24	-	-
	Seca4g00762	859	Pfam	Adaptin N terminal region	41	552	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Seca4g00762	859	SMART	B2_adapt_app_C_2	737	854	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Seca4g00762	859	FunFam	Beta-adaptin-like protein A	14	623	-	-
	Seca4g00762	859	PIRSF	Beta_adaptin	11	859	IPR016342	GO:0015031\|GO:0030276
	Seca4g00762	859	PANTHER	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	16	819	IPR026739	GO:0016192
	Seca4g00762	859	Pfam	Beta2-adaptin appendage, C-terminal sub-domain	740	853	IPR015151	GO:0006886\|GO:0016192\|GO:0030131
	Seca4g00762	859	Gene3D	-	15	607	IPR011989	-
	Seca4g00762	859	MobiDBLite	consensus disorder prediction	652	680	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00762	Seca-Chr4	12790307	12803501	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00762	-		-	gmx:100801153	1546.56

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g00762	4	12790307	12803501	Seca4g00762	4	12790307	12803501	ECH