Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00752 ATGGCGACGCCGTCGTTGGATGAAGAAACAACCAAGAAAGTGATACGACAAGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCACAGACAGTTTTATGAGGAAAACTGTCACCGAAAGCGAAGATGGCATGGTTAGTTTAGCGTTAATTTGTTCTTTCAATCGAATGCGGAAGCACCTTAATTTGGGTGATGTAAAGCCCGATGAAGTCACCCAAGATACTGTTAATGCTGTTGCTCAAGCTTTGAGAAATTCGGCTACACTCAAAGTCTCCGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTCCCAAAGTCAGAAGAGGTAATTGAGCAGGTGGAGATAAGAACAATTGCTGCATCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGACTTTCTTTGGTCAATATGCCAAGGTTAATAGTGTCAGGCTTCCGCGTCATGTTGGTGACAAGAAGTTCTTCTGTGGCACTGCCCTTATTGAGTTCTCGTCAGAAGAAGAAGTAGAAAAAGTTATGAAGCAAAAATTGGTCTATGCTGGGGCTGAGTTAGAACTAAAACCAAAGAAGGACTTCGATGCAGAAAGAGAAAAAGAGTTAGAAGATTATAAAAAATCTCGTCCACCTATCGGCTCAAATTGCCAGAATAACACAAATGCAGAAGAAAACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAGTTCCTTCAGAAAAAAATGCAGTTGATCAACAAGCCAATGACAATAGTGCTGTCTCCAAAACAGATGAAAAAAATCCCACTGAAATTACTTCTGGGGAAGGTGATCAAAAGATATCAGAAAATGTTGAAAATGATGGAGAAAACAATGAGTTGAACGAAGAAAAGGAAACTGAAGGTGAAGAAAAGAGTCGAGAAACAGACGAGAAGTTTTCAGCTGCATCTTACAAGGACAACATGGATGTTGTCTTGCGTGAGGATTTGAAGGATGTCTTTGAGAAGTTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATCCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCCCGTGCTGCTGCAGTTCTTTCAGAAAAGGGCGGCTTGGTTGTAAAGAATTTCATTGCTATTCTAGATCCTGTGACTGGTTAG 1173 0.4066 MATPSLDEETTKKVIRQVEFYFSDSNLPTDSFMRKTVTESEDGMVSLALICSFNRMRKHLNLGDVKPDEVTQDTVNAVAQALRNSATLKVSEDGKKVGRTTELPKSEEVIEQVEIRTIAASPFEYDLKLEDVETFFGQYAKVNSVRLPRHVGDKKFFCGTALIEFSSEEEVEKVMKQKLVYAGAELELKPKKDFDAEREKELEDYKKSRPPIGSNCQNNTNAEENYPKGLIIAFKLKSISDEVPSEKNAVDQQANDNSAVSKTDEKNPTEITSGEGDQKISENVENDGENNELNEEKETEGEEKSRETDEKFSAASYKDNMDVVLREDLKDVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVLSEKGGLVVKNFIAILDPVTG. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00752 390 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Seca4g00752 390 SMART la 8 100 IPR006630 -
Seca4g00752 390 Coils Coil 290 310 - -
Seca4g00752 390 MobiDBLite consensus disorder prediction 199 221 - -
Seca4g00752 390 CDD LA_like_plant 10 99 - -
Seca4g00752 390 Gene3D - 109 207 IPR012677 -
Seca4g00752 390 SUPERFAMILY RNA-binding domain, RBD 109 193 IPR035979 GO:0003676
Seca4g00752 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Seca4g00752 390 SUPERFAMILY RNA-binding domain, RBD 326 367 IPR035979 GO:0003676
Seca4g00752 390 ProSiteProfiles xRRM domain profile. 303 390 IPR014886 GO:0003723
Seca4g00752 390 Gene3D - 311 390 IPR012677 -
Seca4g00752 390 MobiDBLite consensus disorder prediction 245 313 - -
Seca4g00752 390 MobiDBLite consensus disorder prediction 245 279 - -
Seca4g00752 390 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Seca4g00752 390 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Seca4g00752 390 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Seca4g00752 390 SUPERFAMILY "Winged helix" DNA-binding domain 6 103 IPR036390 -
Seca4g00752 390 FunFam La protein 2 6 106 - -
Seca4g00752 390 MobiDBLite consensus disorder prediction 297 313 - -
Seca4g00752 390 Pfam La domain 14 84 IPR006630 -
Seca4g00752 390 Pfam RNA binding motif 324 379 IPR014886 GO:0003723
Seca4g00752 390 PANTHER LUPUS LA PROTEIN-RELATED 10 313 IPR045180 -
Seca4g00752 390 Gene3D - 6 108 IPR036388 -
Seca4g00752 390 SMART rrm1_1 117 189 IPR000504 GO:0003723
Seca4g00752 390 SMART rrm1_1 320 379 IPR000504 GO:0003723
Seca4g00752 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Seca4g00752 390 CDD RRM1_La 117 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00752 Seca-Chr4 12635665 12639902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00752 K11090 - gmx:100786016 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00752 4 12635665 12639902 Seca4g00752 4 12635665 12639902 ECH
Seca4g00752 4 12635665 12639902 Seca4g00752 4 12635665 12639902 PCT