Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00749 ATGCGCCCACCGGTTATTCTCGAAACTACCCTTTCTTCTTCTTCTTCTTCTTATTCTTATTCTTCACCCAGCGATCGCAGGCTTCACACTCTTGCAAGACACCTCGTTAACGTTCACGATCACAATCAAATGGATTCTCACAACATCTCTGCTTCGCCAACCTCTGCTTCTGATTCCATCTTCGCTCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTGACTGTCGCTTACAACAAAGACCCTAGCCCAGTTAAGCTCAATTTAGGTGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGAGAGTTGAACAACAACTCGTGAACGACCTGTCACGCAACAAGGAATATCTTCCAATTGTTGGGCTTGCCGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGTGCTGACAGCCCTGCTATCCAAGAGAACAGGATTACCACTGTACAATGCTTGTCTGGCACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGATTATATACTTGCCACAACCAACTTGGGGCAATCACCCAAAGGTTTTCACCTTGGCGGGGTTATCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTGAAGGACTTCTAGAAGATCTTGGTTCTGCCCCATCTGGGTCTGTTGTTTTACTACATGCATGCGCGCACAACCCTACTGGTGTTGATCCAACCCCTGAGCAATGGGAGCAGATTAGGCAGCTGATAAGATCAAAAGCTTTGCTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGCGGAAGTCTAGATGCGGATGCACAGGCTGTTCGCATGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCGCAGAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGTGTCGGTGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGGTGAAACTAGTGATTAGGCCCATGTACTCAAACCCTCCCATTCATGGAGCATCCATTGTGGCTGCCATTCTCAAGGACCGGGATTTGTACAATGAGTGGACTATAGAGTTGAAGGCAATGGCTGATCGTATTATCAATATGCGCCAACAACTTTTTGATGCTTTACAAGCCAGAGGCACGCCAGGGGATTGGAGTCACATTATCAAGCAGATCGGAATGTTTACTTTCACAGGATTGAATTCTGAGCAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATCTGATGGGTAA 1305 0.459 MRPPVILETTLSSSSSSYSYSSPSDRRLHTLARHLVNVHDHNQMDSHNISASPTSASDSIFAHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLVNDLSRNKEYLPIVGLADFNKLSAKLIFGADSPAIQENRITTVQCLSGTGSLRVGGEFLAKHYHQRIIYLPQPTWGNHPKVFTLAGLSVKTYRYYAPATRGLDFEGLLEDLGSAPSGSVVLLHACAHNPTGVDPTPEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQAVRMFVADGGELLVAQSYAKNMGLYGERVGALSIVCKSADVASRVESQVKLVIRPMYSNPPIHGASIVAAILKDRDLYNEWTIELKAMADRIINMRQQLFDALQARGTPGDWSHIIKQIGMFTFTGLNSEQVSFMTKEYHIYMTSDG. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00749 434 PANTHER ASPARTATE AMINOTRANSFERASE 55 434 IPR000796 GO:0006520|GO:0008483
Seca4g00749 434 Pfam Aminotransferase class I and II 87 432 IPR004839 GO:0009058|GO:0030170
Seca4g00749 434 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 304 317 IPR004838 GO:0003824|GO:0009058|GO:0030170
Seca4g00749 434 Gene3D - 120 361 IPR015421 GO:0003824
Seca4g00749 434 Gene3D Aspartate Aminotransferase, domain 1 66 434 IPR015422 GO:0003824
Seca4g00749 434 PRINTS Aspartate aminotransferase signature 235 254 IPR000796 GO:0006520|GO:0008483
Seca4g00749 434 PRINTS Aspartate aminotransferase signature 334 359 IPR000796 GO:0006520|GO:0008483
Seca4g00749 434 PRINTS Aspartate aminotransferase signature 266 278 IPR000796 GO:0006520|GO:0008483
Seca4g00749 434 PRINTS Aspartate aminotransferase signature 402 420 IPR000796 GO:0006520|GO:0008483
Seca4g00749 434 FunFam Aspartate aminotransferase 120 361 - -
Seca4g00749 434 SUPERFAMILY PLP-dependent transferases 59 433 IPR015424 -
Seca4g00749 434 CDD AAT_like 88 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00749 Seca-Chr4 12581278 12586475 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00749 K14454 - gmx:547509 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00749 4 12581278 12586475 Seca4g00749 4 12581278 12586475 ECH