Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00733 ATGGCATCAATTAGAAGAACCTTGTCTCCAGTGCCTCGAGCTGGAAATGTAGCAAACGTAGAAGTCTGTTCAGTAGGTTCTCCCTTGTCTAAGTCCTCATCAAGTCCTCAGAATTCTCCACCATCCGGTGGATTGTTATCTTCTTCAGTCAGCTCACTGGACTACCGAGCTTTTGTGCTTGGCGTTTTCTCCCCGAGATATTTGAGGACTCTTGAGAGATCAAAGCCTAAGGGTCAGCTTTGGAGGAAGGTGCTTTTCCATTTTTTCATTTGTTTCATGATCGGTGTTTCTATCGGTTTCATCCCTCTTGCATCAACAAACTTGTCCATGAATCTCATGCCAAAGCATCAAGCCTTCTCTTTTGAAGTGATATCTGCAGTCAGAAATTTCCAGCCACCTGGAAATTTGAAGATAAATGAGACTCCATCTATAGGCGACGCTGTGAAGTTTAATGCTACTTTGAATTCAGCAGTGAAAGAACGGGAACTAATAGATGATTTAGCATATAATATCTCCGGCAGCCAATTCAGTGAAGATCCATATTTGGGGTCTCATAAGCTTCTCATAATTGTTACCCCGACATACAATCATCTATTTCAAGCATATTATTTGCATCGGTTGTCACAGACTTTAAAATTGGTCCCACCTCCTTTATTGTGGATTATTGTTGAGATGACTTCCCAATCTGAAGAAACAGCTGACATCTTGAGGAGTAGTGGGATTATGTACAGGCATCTTGTTTGCAAAATGAATCTAACCAACACAAGCCATAGCAGCATTCATCAAAGAAATGTTGCAATAGCTCACATTGAAACTCATCGCCTTGATGGAATTGTCTACTTTGCAGATGATGATAATATCTACTCAGCGAAGCTCTTTCAGCAAATGAGAGAAATAAGGCGATTTGGAACGTGGACTGTAGCAAAACTATCAGGAGATAAAAGTAGCATCGTCTTGCAAGGACCCATTTGTAATGGAAGTCAAGTAATTGGATGGCACATAAATGAATCAAATGAGAAATCTAGAAGATTTCATGCTGTAATGCCAGGTTTTGCCTTTAATAGTACGATACTCTGGGATCCAAAAAAGTGGCATCGGCCCACTCTCGAACCTATCAGGCAGCTTGACTCAGTCAAGGAAAGTTTGTCGGTTAGCACATTGATTGAGCAGGTTGTTGAAGAAGAAAGTCAAATGGAGGGCTTAATGGACAGCTGCTCGAGAGTTATGGTTTGGCATATTGATCTCGAGTCATCTTATTCCTCCTATCCTCAGAAATGGATTGTAAAGAACAACCTAGACGTCATTTTTCATCTTCCACTTGCATGA 1326 0.4103 MASIRRTLSPVPRAGNVANVEVCSVGSPLSKSSSSPQNSPPSGGLLSSSVSSLDYRAFVLGVFSPRYLRTLERSKPKGQLWRKVLFHFFICFMIGVSIGFIPLASTNLSMNLMPKHQAFSFEVISAVRNFQPPGNLKINETPSIGDAVKFNATLNSAVKERELIDDLAYNISGSQFSEDPYLGSHKLLIIVTPTYNHLFQAYYLHRLSQTLKLVPPPLLWIIVEMTSQSEETADILRSSGIMYRHLVCKMNLTNTSHSSIHQRNVAIAHIETHRLDGIVYFADDDNIYSAKLFQQMREIRRFGTWTVAKLSGDKSSIVLQGPICNGSQVIGWHINESNEKSRRFHAVMPGFAFNSTILWDPKKWHRPTLEPIRQLDSVKESLSVSTLIEQVVEEESQMEGLMDSCSRVMVWHIDLESSYSSYPQKWIVKNNLDVIFHLPLA. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00733 441 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 187 433 IPR029044 -
Seca4g00733 441 FunFam Glycosyltransferases 187 429 - -
Seca4g00733 441 SUPERFAMILY Nucleotide-diphospho-sugar transferases 187 431 IPR029044 -
Seca4g00733 441 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 79 433 IPR005027 GO:0015018|GO:0016020
Seca4g00733 441 Pfam Glycosyltransferase family 43 207 416 IPR005027 GO:0015018|GO:0016020
Seca4g00733 441 CDD GlcAT-I 186 416 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00733 Seca-Chr4 12384788 12396744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00733 1 435 Glycosyltransferase AT1G27600 44.064 1.41e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00733 K20869 - gmx:100808765 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00733 4 12384788 12396744 Seca4g00733 4 12384788 12396744 ECH