Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00711 ATGGCTTTCACAGCTATCAGAAGCTCCATTTCATGGCCAACTATGGTTGTTTCTGACCATAACGCCAGTAGGGACGGGTTTTCATTTCACAACAAGCCTATCTATAAAGGCAAACGCAATCTTCAAGACTTGACCATCGCAAATGTTGCCAGTCCATTGCCTCTGATTAATGCTCCACCACCACCACCGGAGGAACCGTCAACGACCACCTGCGGCCGCCACCAGCATGTTGCATGGACCAGTATCCCCCAAGAGAGATGGGAAGGAGAGCTCCTTGTTCAAGGACAAATTCCACTCTGGCTGAAAGGAACGTACCTAAGAAACGGCCCTGGCTTGTGGCACATAGGGGACTACAATTTCAGGCATCTATTTGACGGTTACGCCACGTTGGTCAAGCTTCAATTCGAAAACGGCCGGTTAATCGCCGGCCACCGTCAAATCGAATCTCAAGCTTACCAAGCAGCAAAGAAGAATCAGAAAATATGTTACCGTGAATTTTCCGAAGTTCCTAAGGCTGAAAATTTCTTGTCCTACGTTGGGGAGCTCGCAAGCTTGTTCTCCGGCGCTTCCCTCACCGACAATTCAAACACCGGCGTGGTGAAGCTCGGTGACGGAAGGGTGGTTTGTTTAACGGAGACACAAAAGGGATCCATAGTGATAGACCCTGTCACATTGGACACAATTGGAAAATTTGAGTACAGTGATTCATTAGGGGGTCTTATTCACTCTGCACACCCTATTGTGACGGATAACGAGTTTTTGACTTTGCTCCCTGATCTTGTGAAACCAGGGTACTTGGTTGTTAGAATGGAACCTGCCACTAATGAGAGAAAGGTAATTGGGCGGGTCGATTGTCGGGGCGGGCCATCACCCGGTTGGGTCCACTCATTCCCTGTTACGGATCACTATATTGTTGTGCCTGAAATGCCGTTAAGGTATTGTGCTCAGAATTTGCTTAAGGCTGAACCAACTCCATTATACAAGTTTCAGTGGCACCCTGAATCTAAAGGCTATATGCATGTTATGTGCAAGACTAGTGGAAAAATTGTGGCAAGTGTGGAAGTGCCTCTGTTCGTTACTTTCCATTTCATAAACGCATATGAAGAGGTAGATGAAGATGGGCGGATAACTGCAGTTATTGCTGACTGTTGTGAGCATAATTCAGATACTACCATTCTTGATAGGCTTAGATTACAGAACCTTCGCTCATTTAATGGTGAAGATGTTCTACCAGATGCTAGGGTTGGTCGATTTAAAATACCACTGGATGGAAGTTCATATGGGACATTGGAGGCAGCATTAGATCCAAATGAACATGGGAAAGGAATGGACATGTGCAGCATAAACCCTAATTATTTAGGGAAGAAATATAGATATGCCTATGCTTGTGGAGCAAAGCGCCCTTGTAACTTCCCTAACACCCTCACTAAGGTAATTTAA 1440 0.4576 MAFTAIRSSISWPTMVVSDHNASRDGFSFHNKPIYKGKRNLQDLTIANVASPLPLINAPPPPPEEPSTTTCGRHQHVAWTSIPQERWEGELLVQGQIPLWLKGTYLRNGPGLWHIGDYNFRHLFDGYATLVKLQFENGRLIAGHRQIESQAYQAAKKNQKICYREFSEVPKAENFLSYVGELASLFSGASLTDNSNTGVVKLGDGRVVCLTETQKGSIVIDPVTLDTIGKFEYSDSLGGLIHSAHPIVTDNEFLTLLPDLVKPGYLVVRMEPATNERKVIGRVDCRGGPSPGWVHSFPVTDHYIVVPEMPLRYCAQNLLKAEPTPLYKFQWHPESKGYMHVMCKTSGKIVASVEVPLFVTFHFINAYEEVDEDGRITAVIADCCEHNSDTTILDRLRLQNLRSFNGEDVLPDARVGRFKIPLDGSSYGTLEAALDPNEHGKGMDMCSINPNYLGKKYRYAYACGAKRPCNFPNTLTKVI. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00711 479 Pfam Retinal pigment epithelial membrane protein 86 478 IPR004294 GO:0016702
Seca4g00711 479 PANTHER BETA-CAROTENE DIOXYGENASE 84 469 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00711 Seca-Chr4 11964398 11968033 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00711 K17913 - gmx:100814148 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00711 4 11964398 11968033 Seca4g00711 4 11964398 11968033 ECH