Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00708 ATGGATGGTCAACTTGGTATCAATGAAGAGGACCCGCATGACGAAAAATATACTGTCGGAAATTATTCTTCAGTGCCCTGCTTACTTAACAAGTTTATGAAGTTGCACCCTCCTGATTCTTCAACAGCTGTGCCTGAAGCAGAAGGCAGAGCATCACTAAAGATATGTGCTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAATTGTGGGACCCTGTGGATGTGGGGAAACTGCCCACAAGAAGGCAAAGAATCTGGGTTATCTCTTGTAAGCAGTTTCACTCCAACTCCAGTCCGGGATTTTCATGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTCGTGGCTCTGGTTAGTGCTACAGAATCATACAAGGATGAAGATCTAGTGTGCTACTCTTGGGGTTATAACAGCCATGGCCAATTAGGCTTGGGGGATAGGGAGAGCAGGCTGCATCCAGAAGTTGTGAAAACATCTGATATGGAGTCTCCTTGGACAATTTATGATGTAGCATGCGGTGCCTTTCACACTGCATTGCTCACTCACAAAAGGAAACCAAGTGATACATTAGAAAGCATGTGCTGGACCTTTGGCCGTGGGGATAATGGCCAACTTGGGCATGGAACAACACAAAGCATTTTGTTTCCTACACCTGTTAAAGAATTGCCACAAAATGTAAATCTTATTTCTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTTTCCTCAGCTGGGGATGTGTGGTCTTGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGTGCAGAAACAGATTCTGGTGATGCCCTCTCTCCCCTTCTCATCCCATGCAAGCCTTATGAAACTAAATTTCCAGATCCAGTTAAAGTTGCATGTGGGGCTGCACATACTGTTGTTGTTGCACTGGGGGGATATAAGCTGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGAAATGGTAATGAAGTGGATTTTTACACTCCCACCATCGTGCTGTGGTCTCCAATGATGGAGGAAGAGGAATTAAGGAGCTCTACTGAGCAAGATAAGGCGACGGAGAAGGAAACCGATGTAATAACAGAAACAGATGAGAAATTATCCTCAGCACTGAAAGAGCTGGAGATGCTTCAAAAAAAGCTATCTATAATGGAAAAATATGCTAGTATACTTCATGGTTCTATTTTTGGAAAACCATTTGATGAGCAAGATATCCCTGTTTCATTGCAGAATTCAGGTTCATTGGATATTGCAAAAGAATGGGAGAACATGTTAGAGGCAGCAGATAATAGGAAGCTAATGAGGCTGGAAATGTTTTACCGCGACATGCTTGCTGGTGTGAAAGATAAATTAATGAGGAGAAAGATCAAGGATATTATAAAGGAGTGTCTCCAATCTTCAGAGGTGAAAGGGCCTCTTTGA 1443 0.4373 MDGQLGINEEDPHDEKYTVGNYSSVPCLLNKFMKLHPPDSSTAVPEAEGRASLKICAVKAGGMMSLAIDNCGTLWMWGNCPQEGKESGLSLVSSFTPTPVRDFHGHTVVKVACGNEHVVALVSATESYKDEDLVCYSWGYNSHGQLGLGDRESRLHPEVVKTSDMESPWTIYDVACGAFHTALLTHKRKPSDTLESMCWTFGRGDNGQLGHGTTQSILFPTPVKELPQNVNLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASRAETDSGDALSPLLIPCKPYETKFPDPVKVACGAAHTVVVALGGYKLWSWGRGRSGVLGNGNEVDFYTPTIVLWSPMMEEEELRSSTEQDKATEKETDVITETDEKLSSALKELEMLQKKLSIMEKYASILHGSIFGKPFDEQDIPVSLQNSGSLDIAKEWENMLEAADNRKLMRLEMFYRDMLAGVKDKLMRRKIKDIIKECLQSSEVKGPL. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00708 480 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 174 184 IPR000408 -
Seca4g00708 480 Pfam Regulator of chromosome condensation (RCC1) repeat 199 244 IPR000408 -
Seca4g00708 480 Pfam Regulator of chromosome condensation (RCC1) repeat 136 184 IPR000408 -
Seca4g00708 480 Pfam Regulator of chromosome condensation (RCC1) repeat 249 307 IPR000408 -
Seca4g00708 480 SUPERFAMILY RCC1/BLIP-II 50 341 IPR009091 -
Seca4g00708 480 PRINTS Chromosome condensation regulator RCC1 signature 310 326 IPR000408 -
Seca4g00708 480 PRINTS Chromosome condensation regulator RCC1 signature 197 213 IPR000408 -
Seca4g00708 480 PRINTS Chromosome condensation regulator RCC1 signature 232 245 IPR000408 -
Seca4g00708 480 PRINTS Chromosome condensation regulator RCC1 signature 251 267 IPR000408 -
Seca4g00708 480 Coils Coil 367 387 - -
Seca4g00708 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 310 IPR000408 -
Seca4g00708 480 Gene3D - 1 370 IPR009091 -
Seca4g00708 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 248 IPR000408 -
Seca4g00708 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 72 124 IPR000408 -
Seca4g00708 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 187 IPR000408 -
Seca4g00708 480 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 46 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00708 Seca-Chr4 11898523 11902114 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00708 - - gmx:100815199 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00708 4 11898523 11902114 Seca4g00708 4 11898523 11902114 ECH