Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00707 ATGGAGTCCTCTGATTCTAATTCCATCCCAAACCATTACCACCACCACCGATTCAAACCAAGCCAACCCATTTCAGACCGAATAGTCCGCGCCCTCCGCCACCGCCTCCGCCTCCTCCACCGCTCTGCCTCCACCTTCTTCATACTCGGCGCCACCGGAAACGTCTACACAGTGACCTTATCCTGCACTCCATCTTGCACCTGCCCTGACCGCACAACCCCTTGCAAGCACATCCTTTTTGTGTTGATTCGAGTTTTGGGTGTGTCCCTTGACGACGTGTGTCTCCGTAGAAGGACCCTTCGACCCTGTCAACTTCAACGCCTATTGAGCTTGCCCACCTTGCCAGAGGCAGTAGCAGGGGGTACCCTTCGCCAGAGGTTTCACCAGTTGTTCTTTGATGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGTCAATGATAGAGATGGAGGAAGGTGCAACGTGCCCTGTTTGCCTTGAAGAAATGGGGAAGGAAGAAAAGTTGGTGGCTTGTGGGACATGCCGTAATCCGATTCATGAAGAGTGTTTGGCGAGGTGGAAGAGAAGCAGGGGAAGAAGATCAGCGAGTTGTGTGATTTGTAGAGCAAGGTGGAGGGATAGAGCAGAACAAGATAAGTATCTCAATTTGTCTGCTTATGTTAGCGAAGACGAATCTGGGAGTCTCTGCACTGGCTAG 693 0.5253 MESSDSNSIPNHYHHHRFKPSQPISDRIVRALRHRLRLLHRSASTFFILGATGNVYTVTLSCTPSCTCPDRTTPCKHILFVLIRVLGVSLDDVCLRRRTLRPCQLQRLLSLPTLPEAVAGGTLRQRFHQLFFDGRGGGGGGGGSMIEMEEGATCPVCLEEMGKEEKLVACGTCRNPIHEECLARWKRSRGRRSASCVICRARWRDRAEQDKYLNLSAYVSEDESGSLCTG. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00707 230 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 15 226 IPR039903 GO:0061630
Seca4g00707 230 SUPERFAMILY RING/U-box 148 206 - -
Seca4g00707 230 ProSiteProfiles Zinc finger SWIM-type profile. 56 86 IPR007527 GO:0008270
Seca4g00707 230 Pfam SWIM zinc finger 56 84 IPR007527 GO:0008270
Seca4g00707 230 ProSiteProfiles Zinc finger RING-type profile. 154 200 IPR001841 -
Seca4g00707 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 217 IPR013083 -
Seca4g00707 230 Pfam Ring finger domain 153 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00707 Seca-Chr4 11868553 11869245 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00707 - - var:108321788 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00707 4 11868553 11869245 Seca4g00707 4 11868553 11869245 ECH