Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00685 ATGAAATCAGCAAGCATTGGGACGACTGCAGAGATTCGACAATATGGGCGTCTCGAGGATGGTTCATTGAATGTGGTTACCCGTGGACAACAAAGATTTCGCCTAAGACGTTGTTGGCATGATGCGGAAGGAGTGCCTTATGGAGAGATACAAATTATTGAAGAAGATCTACCGTCAAGAACTCCAAGGGATGCTTTTGGCAAATTAGCACCATTAAGTAATATGTCCTGTAGCCATGCCATCTCACATGCATTGTCTCCAAAATACTCTCATGTTAAAACGCATGGATCAAAAAATGGGGGAAATGATTCAGAAGCAAACTCAGATGAGAGTTTTGAGAGCGAGCTGTCACTAATGGAAAGGAAAATTCACCTATCAGCCATTGGCTCCAGTCACGTGCATGATGTGATGGGTGAATCAAAAAACAGCAGTGATGTTAAATCCATCAATAAGTCAGATCAGGAAATTAGATCCAATTTGGATTCAAGCATTGGGAACTGTTCCACTTCTGGAAAACAGTCGTCCAAAGAAGAGCTGAATAGATGCTATAAAAACATATATGGCTACCCATCGCATAAAATTTCAAAAGCATTCTGGCCCCATTGGGTATACCGAATGTATGACTCCTATTGGCTTGCACAAAGGGCTGCAGATATGTGGAAGCAAATAGTTGGGGTGCCTAGCTTGGATAGTCTCATTAAGAAGCCTGATGTCTTATCATTTCATATCGCCAGTAAAATACCAGTGTCTGAATCTACAAGGCAGGAGCTTTTGGATATGGATGGCATTACATATAGGTTGCGCAGGGAAATTGAATTACTAGAGAGCATTGATCTTATCCAATGTAAAAGATGCCAAACTATCATTGCAAAACGAAGTGATATGTTGGTGATGTCAAGTGAGGGTCCTCTCGGTGCATATGTGAATCCAGGTGGTTATGTGCATGAGATAATGACTCTTTACAAAGCCAATGGGTTAGCTCTCATCGGGCCAGCAGTTACAGAATACAGTTGGTTTCCTGGGTATGCATGGACAATCGCTCAGTGTGCCACATGTAAAGCCCAAATGGGATGGCTTTTTACAGCCACGAAAAGAAAAATGAAACCCATCTCATTTTGGGGGATTCGGAGCTGTCAAGTTGCAGAAGAAATACGCCGAAACCTTTAA 1167 0.4216 MKSASIGTTAEIRQYGRLEDGSLNVVTRGQQRFRLRRCWHDAEGVPYGEIQIIEEDLPSRTPRDAFGKLAPLSNMSCSHAISHALSPKYSHVKTHGSKNGGNDSEANSDESFESELSLMERKIHLSAIGSSHVHDVMGESKNSSDVKSINKSDQEIRSNLDSSIGNCSTSGKQSSKEELNRCYKNIYGYPSHKISKAFWPHWVYRMYDSYWLAQRAADMWKQIVGVPSLDSLIKKPDVLSFHIASKIPVSESTRQELLDMDGITYRLRREIELLESIDLIQCKRCQTIIAKRSDMLVMSSEGPLGAYVNPGGYVHEIMTLYKANGLALIGPAVTEYSWFPGYAWTIAQCATCKAQMGWLFTATKRKMKPISFWGIRSCQVAEEIRRNL. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00685 388 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 279 371 IPR004910 -
Seca4g00685 388 PANTHER CEREBLON 5 378 - -
Seca4g00685 388 ProSiteProfiles Lon N-terminal domain profile. 1 276 IPR003111 -
Seca4g00685 388 ProSiteProfiles CULT domain profile. 277 384 IPR034750 -
Seca4g00685 388 FunFam Lon protease homolog 208 272 - -
Seca4g00685 388 FunFam Blast:Protein cereblon homolog 273 388 - -
Seca4g00685 388 Gene3D - 208 272 - -
Seca4g00685 388 SMART lon_5 1 276 IPR003111 -
Seca4g00685 388 Gene3D - 1 53 IPR046336 -
Seca4g00685 388 CDD CRBN_C_like 280 376 IPR034750 -
Seca4g00685 388 MobiDBLite consensus disorder prediction 92 113 - -
Seca4g00685 388 MobiDBLite consensus disorder prediction 89 113 - -
Seca4g00685 388 Pfam ATP-dependent protease La (LON) substrate-binding domain 4 275 IPR003111 -
Seca4g00685 388 SUPERFAMILY PUA domain-like 4 275 IPR015947 -
Seca4g00685 388 Gene3D Peptide methionine sulfoxide reductase. 273 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00685 Seca-Chr4 11438307 11443289 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00685 K11793 - gmx:100779918 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00685 4 11438307 11443289 Seca4g00685 4 11438307 11443289 ECH