Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00682 ATGATGTACAACAATTATCTAAGGCTACAAGGGCAACTGCAGCCATTTACCTTGCATGTGGGGTGGATCCTTCAAAGGTTCTTTGCAACTTTTACTAGGAACTTTGTGAGAAATAGTATTAATGGTGAAATGTCAGGACCAGTGTGGATAAATGACATTTCTTTGTGCAAACAGGCTTCAGTTTTTGTACAGTCTCATGTTCGTGCACATGTTGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGGGAGACGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAACATTTGGAGTTGACCCGTGACTTAGCTGAACGGGTTCCAGAGCCCCTTATACCTCCAGCTGGAGCCCGGATTATGTCCCTAACTGATGGCCTGTCAAAGATGTCAAAGTCTGCACCTTCCGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAGACTGATTCATTTCCCGGCTTGGAATTTGACAATTCTGAGAGGCCTGAATGTAATAATCTTCTTTCAATATACCAGCTCATTTCTGGAAAGACGGAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAAGTTCTTTTAACAGATGCCTTGATTGATCATTTGCAACCTATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGAAGTTTTGGCAGACGGTGCTAGAAAAGCAGCACATATAGCGGATGCTACACTTAATAATGTTTACCAGGCAATGGGATTTTTAAGGAGACAGTGA 918 0.4129 MMYNNYLRLQGQLQPFTLHVGWILQRFFATFTRNFVRNSINGEMSGPVWINDISLCKQASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECNNLLSIYQLISGKTEEEVVQECQNMNWGTFKVLLTDALIDHLQPIQVRYEEIMSDSGYLDEVLADGARKAAHIADATLNNVYQAMGFLRRQ. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00682 305 FunFam Tryptophan--tRNA ligase 159 269 - -
Seca4g00682 305 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 57 302 - -
Seca4g00682 305 Pfam tRNA synthetases class I (W and Y) 56 257 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca4g00682 305 Gene3D HUPs 51 162 IPR014729 -
Seca4g00682 305 PRINTS Tryptophanyl-tRNA synthetase signature 168 178 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Seca4g00682 305 PRINTS Tryptophanyl-tRNA synthetase signature 125 146 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Seca4g00682 305 Gene3D - 163 269 - -
Seca4g00682 305 SUPERFAMILY Nucleotidylyl transferase 58 301 - -
Seca4g00682 305 NCBIfam tryptophan--tRNA ligase 57 301 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00682 Seca-Chr4 11415061 11425717 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00682 K01867 - gmx:100780314 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00682 4 11415061 11425717 Seca4g00682 4 11415061 11425717 ECH