Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00667 ATGGTGAGTTCCGATAGTCCCAACGGTGGTTCTACAACGCCACCGCCACCGCCACCGAAACAAGGGTTTACAAAGCCCATCTCTCTTGCCGGTCCCACCGATGCTGATATCCAACGTAACCTCGAATTGGAGAAGTTCTTGCTTGATTCCGAGCTTTACGAGAGCAATGAAGAAGCTGCAACCAGACAAGAGGTTCTTCGCCGCCTTGATCAGATTGTGAAAAGTTGGGTGACACAGTTGACTCGCCAGCCAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTAACTTTTGGCTCTTATCGGTTAGGGGTTCATGGACCTGGCGCTGACATAGACGCTTTGTGCATTGGTCCTTCTTATGTGCATCGAGAGGAAGACTTCTTTATCATTTTGCATAACATCCTGGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTTTCTGATGCGCATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCGATAGATTTGCTGTATGCGAGTATATCTCTTTTGGTTGTGCCAGAAGACCTGGATATCTCACATGGTTCCGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGTACAACGCTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAACGTTACTGGATTCCTTGGCGGTGTAAATTGGGCTATTTTAGTTGCTCGAGTTTGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTGTGCTCTATAGAAGAGAATGAACTGGGTTTCCCTATATGGGATCCTCGTAGAAACCCCCGGGACAGATTTCACATTATGCCAATAATCACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCTGCAAGCACACTCCGTGTTATGATGGAACAGTTCCGCTATGGCAACAAGATTTGTGATGAAATTGAGCTTAACAAAGCCCAGTGGAGTGCGCTTTTTCAACCATATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTTGACATAATTGCATTAGATGCAGATGATTTACTAGCATGGAGGGGTTGGGTAGAATCTCGGTTGAGACAGCTAACCCTGAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGTCATCCTTATCCACATGAGTATTCAGACACATCCAAGCCATGTGCGCATTCTGCATTTTTCATGGGCTTACAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTATGCATACTGGAAGCCAGGGATGGAAATTCATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGTATTTGTTTTTCCAGATGGTTACAAACGCACTCGAATGCCAAGGAATGTAAGCCATCTCGCTGAAAAAACGGGTGATGATACCACAAGGTGCTACTCTGGGTCTAGGTCTTCTGAAAGGTGCATCAAGAGGAAAAATAACCCTGAAATGGAGGATCAGGATGTGAAGGAAGATAAACCAGAAAAGCGGGCATCTGTTAGCCCACAGAGGCTAGACTGTGTTTCTCCTGAAAGTTGTACCAGTAAATTGGGTGGTACACCTCAAATGAACATCGAGTGTATTGAAAGGGTTAGGTTAGTTGACTCAACAATGAAGGATGCTGACAACAACTGTGAAATCAAGTCATCTGATGGACTCCTAGGAAGTGGAACAAGTACTGAAGTAGATAGCGTGCAGATTAGTGAAACAGGTTTTGTTGACTCCACAAATGATAGGATGAAACCTAAGGGTTTGGAAGTTCCGAATGAGGTAAGCCTGCTGAACCAGTGGAAGAACCTTTCTTTGGGAAGTTGTTTAGTTCATGTGAAGTTCCTTAATTAG 2010 0.4398 MVSSDSPNGGSTTPPPPPPKQGFTKPISLAGPTDADIQRNLELEKFLLDSELYESNEEAATRQEVLRRLDQIVKSWVTQLTRQPGYTDQMVEDANAVILTFGSYRLGVHGPGADIDALCIGPSYVHREEDFFIILHNILAEMEEVTELQPVSDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIELNKAQWSALFQPYVFFEAYKNYLQVDIIALDADDLLAWRGWVESRLRQLTLKIERDTNGMLQCHPYPHEYSDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYAYWKPGMEIHVSHVRRKQLPVFVFPDGYKRTRMPRNVSHLAEKTGDDTTRCYSGSRSSERCIKRKNNPEMEDQDVKEDKPEKRASVSPQRLDCVSPESCTSKLGGTPQMNIECIERVRLVDSTMKDADNNCEIKSSDGLLGSGTSTEVDSVQISETGFVDSTNDRMKPKGLEVPNEVSLLNQWKNLSLGSCLVHVKFLN. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00667 669 PANTHER POLY A POLYMERASE 20 544 - -
Seca4g00667 669 FunFam Poly(A) polymerase alpha, putative 54 210 - -
Seca4g00667 669 FunFam Nuclear poly(A) polymerase 4 368 484 - -
Seca4g00667 669 Pfam Poly(A) polymerase predicted RNA binding domain 431 501 IPR007010 GO:0003723|GO:0043631
Seca4g00667 669 Pfam Poly(A) polymerase predicted RNA binding domain 369 428 IPR007010 GO:0003723|GO:0043631
Seca4g00667 669 PIRSF PolyA_polymerase 10 628 IPR014492 GO:0005634|GO:0043631|GO:1990817
Seca4g00667 669 Gene3D Beta Polymerase, domain 2 54 210 IPR043519 -
Seca4g00667 669 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g00667 669 MobiDBLite consensus disorder prediction 515 560 - -
Seca4g00667 669 Gene3D Poly(A) polymerase predicted RNA binding domain 368 484 - -
Seca4g00667 669 SUPERFAMILY PAP/OAS1 substrate-binding domain 217 366 - -
Seca4g00667 669 Pfam Poly(A) polymerase central domain 22 365 IPR007012 GO:0043631|GO:1990817
Seca4g00667 669 FunFam Putative poly(A) polymerase gamma 196 364 - -
Seca4g00667 669 Pfam Nucleotidyltransferase domain 95 170 IPR002934 GO:0016779
Seca4g00667 669 Gene3D - 22 364 - -
Seca4g00667 669 MobiDBLite consensus disorder prediction 527 556 - -
Seca4g00667 669 CDD NT_PAP_TUTase 62 216 - -
Seca4g00667 669 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 369 494 IPR011068 GO:0003723|GO:0016779|GO:0031123
Seca4g00667 669 SUPERFAMILY Nucleotidyltransferase 22 215 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00667 Seca-Chr4 11117725 11124086 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00667 K14376 - gmx:100819294 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00667 4 11117725 11124086 Seca4g00667 4 11117725 11124086 ECH