Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00666 ATGTATGGGGTCAACAAAGTCCTTGGCATAGATGGTGGTTATAGAGGCTTTTATTCCAAGAACACCATTACTTTAACACCTAAAGTGGTCAATGACATCCATAAACGTGGGGGAACGATTCTTGGGACATCACGAGGAGGGCATGATACTGGCAAGATAGTTGACAGCATCCAGGATCGTGGAATTAATCAGGTTTATATTATTGGAGGAGATGGAACACAGAGAGGAGCAGCTGTGATTTATGAGGAAGTTAGACGGCGGGGTTTGAAGGTAGCAATTGCTGGAATTCCTAAAACTATAGACAATGACATCCCGGTTATTGACAAGTCTTTTGGATTTGATACTGCGGTTGAGGAGGCTCAACGTGCCATTAATGCAGCGCATGTTGAAGCTGAAAGTGCTGAGAATGGCCTTGGTGTTGTAAAGCTAATGGGTCGTTATAGTGGTTTTATTGCAATGTATGCTACTCTTGCTAGCAGAGATGTGGACTGTTGCTTGATTCCAGAGTCACCCTTCTATCTTGAAGGAAAGGGTGGACTTTTTGAATTTATTGAGAAAAGGCTGAAAGAAAATGGGCATATGGTTATAGTCATAGCTGAGGGAGCTGGACAAGATCTTCTTACAGAAAGCATGCAAGCCATGGACCAGAAGGATGCTTCTGGAAATAAGCTTCTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGGATCATTTTGCAAGGACAAATAAGATGCCCATCACTCTTAAATATATAGATCCAACTTACATGATCCGGGCAGTTCCAAGCAATGCATCCGACAATGTCTACTGCACACTTCTTGCTCAGAGTGCAGTTCATGGTGCAATGGCAGGGTATACTGGATTCACAGTTGGGCTGGTCAATGGCAGACATACTTATATTCCATTCAACAGAATCATTGAGAGGCAGAACAAGGTTGTGATTACTGACAGGATGTGGGCAAGACTCCTTTCTTCAACTAACCAGCCAAGCTTTTTGAAACCCAGAGATGTTGATGAAGTCAAGAAAGCAAAACAACCTCCGACTCAATTGTTAGAAGGGGACAATTGCAATGATGTTAACAAAGCAGAGAAAGCAGAACAACCTCCGACTCAATTGGAAGGGGACAAGTGCAATGATGTTTCAGAACCCGAGAAAGCAGAACAACCTCCCACCCAATTGTTAGAAGGCGACAAGCTAAAGAATGAACAAGAATCAGGAAACCATGCTGACAGTTGTATCAAGACAAAAAATTAG 1260 0.4246 MYGVNKVLGIDGGYRGFYSKNTITLTPKVVNDIHKRGGTILGTSRGGHDTGKIVDSIQDRGINQVYIIGGDGTQRGAAVIYEEVRRRGLKVAIAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESAENGLGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVIAEGAGQDLLTESMQAMDQKDASGNKLLQDVGLWISHKIKDHFARTNKMPITLKYIDPTYMIRAVPSNASDNVYCTLLAQSAVHGAMAGYTGFTVGLVNGRHTYIPFNRIIERQNKVVITDRMWARLLSSTNQPSFLKPRDVDEVKKAKQPPTQLLEGDNCNDVNKAEKAEQPPTQLEGDKCNDVSEPEKAEQPPTQLLEGDKLKNEQESGNHADSCIKTKN. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00666 419 Coils Coil 117 137 - -
Seca4g00666 419 PIRSF ATP_PFK_TP0108 1 338 IPR012004 GO:0003872|GO:0005524|GO:0006096
Seca4g00666 419 Gene3D Phosphofructokinase domain 113 273 IPR035966 GO:0003872|GO:0006096
Seca4g00666 419 PRINTS ATP-dependent phosphofructokinase family signature 190 202 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g00666 419 PRINTS ATP-dependent phosphofructokinase family signature 94 111 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g00666 419 PRINTS ATP-dependent phosphofructokinase family signature 133 149 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g00666 419 PRINTS ATP-dependent phosphofructokinase family signature 61 77 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g00666 419 PRINTS ATP-dependent phosphofructokinase family signature 112 130 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g00666 419 PRINTS ATP-dependent phosphofructokinase family signature 4 17 IPR022953 GO:0003872|GO:0006002|GO:0006096
Seca4g00666 419 FunFam Phosphofructokinase 113 271 - -
Seca4g00666 419 MobiDBLite consensus disorder prediction 332 419 - -
Seca4g00666 419 MobiDBLite consensus disorder prediction 399 419 - -
Seca4g00666 419 SUPERFAMILY Phosphofructokinase 2 339 IPR035966 GO:0003872|GO:0006096
Seca4g00666 419 FunFam ATP-dependent 6-phosphofructokinase 1 159 - -
Seca4g00666 419 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1 1 340 - -
Seca4g00666 419 Pfam Phosphofructokinase 6 281 IPR000023 GO:0003872|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00666 Seca-Chr4 11100315 11106644 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00666 K00850 - gmx:100818755 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00666 4 11100315 11106644 Seca4g00666 4 11100315 11106644 ECH