Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00639 ATGGCATCTTCTAAGAGACCAAATGTAGAGCCAAATGGGAAAGGGAAACGCCAAAAATCTTCAGGTGGTTTTTCACCGTTGGATATCTCTGCTGGGAGTGTTGTATTCCGTTTGCTCTGCCCTGTTTCTAGAATCGGCAGTGTTATTGGTAAAGGTGGTGCTATAGTATCACAAATTCGCCAGGAAACTGGTGTGAAGGTTAAGATTGAGGAACCTGTTCCTGGGTGCGATGAAAGGGTTATCACTATTTTAGGTTCTGATAAAGAAACTGAAGAAGATACTGGTGAGCAGGGAAAGGAGGTTAAAAATGATGAGACTGAAAGCAAGGGGAAAGATGATGAGGGGAAAGATCAGAGTGACAATAATGAAGATAAAGATTCTGTTCCTGTTGAGGATTCGCAGCACGAGAAGGGGAACACGTCTATCAGGAAGGCTATATCACTAGTTTTTGAGAGGATGGTTGAGGGAGTAGAGGATACAACTGAAGGAGATGAAGAAAGTAATAAATCTTCTTCCTTTGTTTTTAGGTTACTTGTCCTTTCTAGTCAAGTTGGCTGCCTACTGGGAAAGGGTGGTAGTGTAATAAAAAGAATGTCAGCTGACAGTGGGGCACAGATTCGGATCCTTCCTAGAGACAAACTTCCCCCATGTGCATCAGCTTCTGATGAACTAGTTCAGATCACAGGGGGAGTTGAAGTCATCAGGAAAGCTCTACAATCTGTTACCCAACAGCTTTTGGAAAATCCACCTCGGGATCATGAATCTTTGTCTATCAATTTTTCTGGGGCTTCATCTCATTCATTTGGTCAATTCGCACCACCAAATCGTTCCTTTGCTGCTAAAGGAGCACCTTTTGCTGCTGGGCCTAATGATATTTCTGTTTTCCATTCCGCACCTCCTCTGATTTCCAAATTTCATGAAGGTGCCATCCACGGTCGCGTGAGGCCTTCACAGGAAATGCTTACTTTTCGTTTATTGTGTCCTGCCGAAAAGGTAGGAAATTTAATTGGTAAAGGTGGAGCAATCATAAAGACTGTGCAGCAGGAGACAGCTAGTGAAATCAAGGTTTTAGATGCCATTCCCGATTCAGAGGACTGCGTTATTGTCATATCTGGTCCAGCGCACCCAGATGATAGAATATCTCCTGTGCAAGAAGCTGTATTTCGCGTGCAAAATAGAATAGCCAGGGCTATACCTGATGCCAAAGAGAATAGTATGTTAGCAAGGATTCTTGTTTCTTCCAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGTTATCAGGTGCCCATATCCGCATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAAGATGAAGAAGTAATTCAGATAAGTGGAGAAATTGAGGCAGTGCATGATGCTCTTTTGCAAGTAACCACAAGATTAAGACATCATTTCTTTCGTGATGCATATCCATCTGTCAATTATCCTTCAAATTCTGCATTTATGGATCAACTTCCTCCATTCCCACCTTATTTGGGAAGGAGGGGACTTTCACCTCCCAGAATGTATTCTGACCTAGGTCCTCTACCTCCACATGCTGGTTTTCCCCTTGATGATCGCCCTCCTTTTATGAATAATATACGTAGACCAGGCATTCCTCCTCACATATCTGAAAGGAAGCCCTGGGGTCCTCGGGGGATACTTGAAGGTGGTGGACCCATGGGCTTGCCAGACTTTGCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGAGGGAGCCAACCGATTATCACAAGTACCACTGTTGAAGTTGTCGTTCCTCGAGCGCTGGTGCCTGTAATATATGGGGAAGATGGTGAATGCCTGAAACAAATACTTCAGATCTCTGATGCAAATATTACTATTACTGATCCAAAGCCTGGAGCCGTGGAAACTAAAATTATAATATCTGGAACCCCAGAGCAAACTCATGCCGCTCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTGGTTGA 2019 0.4368 MASSKRPNVEPNGKGKRQKSSGGFSPLDISAGSVVFRLLCPVSRIGSVIGKGGAIVSQIRQETGVKVKIEEPVPGCDERVITILGSDKETEEDTGEQGKEVKNDETESKGKDDEGKDQSDNNEDKDSVPVEDSQHEKGNTSIRKAISLVFERMVEGVEDTTEGDEESNKSSSFVFRLLVLSSQVGCLLGKGGSVIKRMSADSGAQIRILPRDKLPPCASASDELVQITGGVEVIRKALQSVTQQLLENPPRDHESLSINFSGASSHSFGQFAPPNRSFAAKGAPFAAGPNDISVFHSAPPLISKFHEGAIHGRVRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKTVQQETASEIKVLDAIPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNRIARAIPDAKENSMLARILVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKVPKCASEDEEVIQISGEIEAVHDALLQVTTRLRHHFFRDAYPSVNYPSNSAFMDQLPPFPPYLGRRGLSPPRMYSDLGPLPPHAGFPLDDRPPFMNNIRRPGIPPHISERKPWGPRGILEGGGPMGLPDFAGGPPRRISGFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00639 672 ProSiteProfiles Type-1 KH domain profile. 33 101 - -
Seca4g00639 672 MobiDBLite consensus disorder prediction 84 139 - -
Seca4g00639 672 Gene3D K Homology domain, type 1 403 482 IPR036612 GO:0003723
Seca4g00639 672 Gene3D K Homology domain, type 1 169 250 IPR036612 GO:0003723
Seca4g00639 672 Gene3D K Homology domain, type 1 596 669 IPR036612 GO:0003723
Seca4g00639 672 Gene3D K Homology domain, type 1 31 92 IPR036612 GO:0003723
Seca4g00639 672 SMART kh_6 596 666 IPR004087 GO:0003676
Seca4g00639 672 SMART kh_6 171 246 IPR004087 GO:0003676
Seca4g00639 672 SMART kh_6 319 395 IPR004087 GO:0003676
Seca4g00639 672 SMART kh_6 404 479 IPR004087 GO:0003676
Seca4g00639 672 SMART kh_6 32 102 IPR004087 GO:0003676
Seca4g00639 672 MobiDBLite consensus disorder prediction 84 141 - -
Seca4g00639 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 401 487 IPR036612 GO:0003723
Seca4g00639 672 ProSiteProfiles Type-1 KH domain profile. 597 661 - -
Seca4g00639 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 29 88 IPR036612 GO:0003723
Seca4g00639 672 CDD KH-I_PEPPER_rpt1_like 34 87 - -
Seca4g00639 672 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g00639 672 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Seca4g00639 672 Gene3D K Homology domain, type 1 318 396 IPR036612 GO:0003723
Seca4g00639 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 250 IPR036612 GO:0003723
Seca4g00639 672 CDD KH-I_PEPPER_rpt2_like 407 479 - -
Seca4g00639 672 ProSiteProfiles Type-1 KH domain profile. 405 474 - -
Seca4g00639 672 ProSiteProfiles Type-1 KH domain profile. 172 241 - -
Seca4g00639 672 CDD KH-I_PEPPER_rpt1_like 321 388 - -
Seca4g00639 672 Pfam KH domain 599 662 IPR004088 GO:0003723
Seca4g00639 672 Pfam KH domain 409 474 IPR004088 GO:0003723
Seca4g00639 672 Pfam KH domain 175 241 IPR004088 GO:0003723
Seca4g00639 672 Pfam KH domain 322 374 IPR004088 GO:0003723
Seca4g00639 672 Pfam KH domain 36 90 IPR004088 GO:0003723
Seca4g00639 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 597 666 IPR036612 GO:0003723
Seca4g00639 672 CDD KH-I_PEPPER_rpt2_like 174 245 - -
Seca4g00639 672 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 317 661 - -
Seca4g00639 672 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 313 375 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00639 Seca-Chr4 10616320 10621396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00639 K21444 - gmx:100777433 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00639 4 10616320 10621396 Seca4g00639 4 10616320 10621396 ECH