Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00626 ATGGCGTCATTCCGGCGAACTCTGTCGCCGGCGTATCACGACCGCCAGTACCTAAACGGTGCGTTTTCAGTGTCGTCTCCTTCTCACAAGCTTCCATCCTCAAACGCCAAGTACCCGGCACTGGCGGCGGCTTTCCGGCGAGTTATCGGCGGCGTTTTCATGCGGCGGTACGGTCGGAAGGGACAGTGGAGAAAGGCTGCGTATAGGTGCGTGCTGTGTTTCTTCGTAGGGTTCTTGTTAGGGATGTTCCCTTTCGGCCACGTGGTGGAAGACAACATTCGCCCTCAGGACATGTCTTTCGAGATCAAGACGCCACGCGCCGACGCGCAACTGCTTCGCGACGAGGATCGCGTTCCGAAGAAGCGCGGCGAGGAAAACGCGGGTTTCGTGATTGATCCGGTGAGATTGAGCACTGAGAATCACGAGAGTGAGAGTGAGAGTGAGAGATTCGATTTCGTGCCGAGGAAGCAGCTGATTGTGGTGACGCCGACCTACAATCGCGCTTCTCAGTCGTATTTCTTGAATAGGTTGGGTCAGGTGCTGCGGTTGGTTCCGCCTCCGATTCTGTGGGTGGTGGTGGAAACGAACTCGGCGTCGATGGAGACTGCTGAGTTGCTGAGGAAAACGGGTGTGATGTATAGGCATTTGGTGTGCACTAAGAATTCAACTGATGTGAAGGACAGAGGGGTTCATCAGAGGAATACGGCGTTGGAGCACATTGAGCGCCATAGACTTGATGGAATTGTTTACTTTGCAGACGATGATAATGTGTATTCTCTAGAGTTGTTTGAGACCTTGAGAGACATCAGTCGCTTTGGCACTTGGCCTGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCCGTTTGCAATGCAAGCCAAGTGATTGGATGGCATACAAATGAGAAAAGTAAAAGACTTCGCAGATTTCATGTTGATATGTCTGGATTTGCATTTAACAGCACGATCTTGTGGGATCCAAAGCGATGGCGGCGCCCTACTGCAAATCCTGTACGACAATTAGACACAGTGAAGGAGGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAGAGTCAAGTGGAAGGTTCACCCCCTGGTTGTTTCAAAATAATGAATTGGCATCTCCATTTGGGTGCTAATAATATAGTTTATCCAAAGGGTTGGATGCTTCAGAAAAACCTAGATGCTGTCATACCCATCAAGTAA 1230 0.5024 MASFRRTLSPAYHDRQYLNGAFSVSSPSHKLPSSNAKYPALAAAFRRVIGGVFMRRYGRKGQWRKAAYRCVLCFFVGFLLGMFPFGHVVEDNIRPQDMSFEIKTPRADAQLLRDEDRVPKKRGEENAGFVIDPVRLSTENHESESESERFDFVPRKQLIVVTPTYNRASQSYFLNRLGQVLRLVPPPILWVVVETNSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNTALEHIERHRLDGIVYFADDDNVYSLELFETLRDISRFGTWPVAMLAPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTANPVRQLDTVKEGFQETTFIEQLVEDESQVEGSPPGCFKIMNWHLHLGANNIVYPKGWMLQKNLDAVIPIK. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00626 409 SUPERFAMILY Nucleotide-diphospho-sugar transferases 157 402 IPR029044 -
Seca4g00626 409 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 157 404 IPR029044 -
Seca4g00626 409 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 62 403 IPR005027 GO:0015018|GO:0016020
Seca4g00626 409 FunFam Glycosyltransferases 157 399 - -
Seca4g00626 409 CDD GlcAT-I 158 385 IPR005027 GO:0015018|GO:0016020
Seca4g00626 409 Pfam Glycosyltransferase family 43 177 384 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00626 Seca-Chr4 10296859 10301368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00626 1 409 Glycosyltransferase AT1G27600 61.259 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00626 K20869 - gmx:100789348 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00626 4 10296859 10301368 Seca4g00626 4 10296859 10301368 ECH