Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00621 ATGGCTGTTTCAACCACTTTCTCTGGTGCCAAATTGGAGGCTTTATTGCTCAAATGTTCTTCCTCTTCAAGGGGATCATCATCATCTCCAACCCATTTATCAGTGATTGGCAAACCCAGAAAGACCCTCATTCGCTGCGATGCTCAAGCTTCTGATGTGTTGGTTAAGAGCGATGGTCCAAGTAATGCTAGCAGCCTCTCCGCTCTTGAGCAGCTGAAGACTTCTGCAGCTGATAGGTATACAAAGGAAAGGAGCAGCATTGTTGTCATTGGGCTCAGTGTGCACACTGCACCTGTGGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAATGGCCTAGAGCTATTGCAGAGCTGTGTAGTCTTAACCATATTGAAGAAGCAGCAGTTCTTAGCACCTGCAACCGAATGGAGATATATGTTGTTGCTCTTTCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAACAGACAAGTTCAGTCCCTGTGTCAGAGCTTTGCCAGCACCGGTTTTTACTTTACAACAAAGATGCCACACAGCATATTTTTGAAGTATCAGCAGGTCTTGACTCTCTTGTATTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGAAACATTAGTGGGCTATTCAAGCATGCAATTACTGTTGGGAAAAGGGTTAGAACTGAGACTAATATTGCTGCTGGGGCAGTTTCTGTAAGCTCAGCTGCTGTTGAATTGGCCTTTATGAAGCTACCTGAAGCTTCACATGATAAAGCCAGGATGTTAGTTATCGGTGCTGGCAAGATGGGAAAATTAGTGATCAAACATTTGGTGGCAAAAGGTTGCACAAAGATGGTTGTTGTCAATAGAACCGAGGAAAGAGTTGCTGCCATTCGTGAAGAACTGAAGGATGTTGAGATAATTTACAAACCCCTTTCAGAAATGCTCACCAGTGCCGGTGAAGCAGATGTAATTTTCACCAGCACAGCATCAGAAAACCCATTATTCTTGAAAGATCATGTCAAGGACCTTCCTTCTGCAAGTCAAGATGTTGGAGGACATCGCATTTTCATTGATATCTCAGTTCCAAGGAATGTTGGTTCATGTGTCTCAGATCTAGAGTCAGTCCGAGTTTACAATGTTGATGACCTCAAAGAGGTTGTGGCTGCCAATAAAGAGGATAGGCTAAGGAAAGCAATGGAAGCACAGGCAATCATTGCTGAAGAATCAAAACAATTTGAAGCTTGGAGGGACTCACTGGAAACTGTTCCTACTATTAAGAAACTGAGAGCTTATGCTGAAAGAATCAGGGCTGCTGAGCTTGAGAAATGCTTAGGTAAGATGGGTGATGATATCTCAAAGAAGACAAGGAAAGCTGTTGATGATCTTAGTCGGGGTATAGTGAATAGGTTGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAGTGATAGTCGGACTCTAAGTGAGACCCTTGAGAATATGCATGCTTTGAATAGAATGTTCAGTCTTGAGACTGAAATATCTGTTTTGGAGCAAAAGATTCGAGCAAAGGTGGAACAAAACCAGAAGTGA 1611 0.4327 MAVSTTFSGAKLEALLLKCSSSSRGSSSSPTHLSVIGKPRKTLIRCDAQASDVLVKSDGPSNASSLSALEQLKTSAADRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKQTSSVPVSELCQHRFLLYNKDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELAFMKLPEASHDKARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRTEERVAAIREELKDVEIIYKPLSEMLTSAGEADVIFTSTASENPLFLKDHVKDLPSASQDVGGHRIFIDISVPRNVGSCVSDLESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRAAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISVLEQKIRAKVEQNQK. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00621 536 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 533 - -
Seca4g00621 536 ProSitePatterns Glutamyl-tRNA reductase signature. 184 207 IPR018214 GO:0008883
Seca4g00621 536 CDD NAD_bind_Glutamyl_tRNA_reduct 87 410 - -
Seca4g00621 536 Coils Coil 299 319 - -
Seca4g00621 536 FunFam Glutamyl-tRNA reductase 246 405 - -
Seca4g00621 536 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 90 241 IPR015895 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 Hamap Glutamyl-tRNA reductase [hemA]. 86 514 IPR000343 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 Pfam Shikimate / quinate 5-dehydrogenase 258 398 IPR006151 -
Seca4g00621 536 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 86 243 IPR036343 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 Gene3D - 85 246 IPR036343 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 FunFam Glutamyl-tRNA reductase 86 246 - -
Seca4g00621 536 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 410 496 IPR036453 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 412 516 IPR015896 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 246 406 IPR036291 -
Seca4g00621 536 NCBIfam glutamyl-tRNA reductase 87 496 IPR000343 GO:0008883|GO:0033014|GO:0050661
Seca4g00621 536 Gene3D - 247 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00621 Seca-Chr4 10200302 10203422 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00621 K02492 - gmx:100782247 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00621 4 10200302 10203422 Seca4g00621 4 10200302 10203422 ECH