Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00592 ATGGAGCAGTATATTGCAGGGCAGTCCAGGGATTTGGTTGACCAGGCATACACAAAATTTGTTAGCATAATGTTCGTAACTTTGGAAAAACTTGCACAAACAGATCCAAAGTACGCAGATATTTTTCTAATAGAGAACTATGCTGCTTTTCAAAATAGTTTGTATGACCTGGCCAACGTGGTACCCACTTTGGCCAAGTTTTATCATCAGGCTAGTGAAGCCTATGAGCAAGCTTGCACTCGCCATATTAGCATGATCATCTACTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAAGACTTGATTCTCAATAATGTTCCGCCTGAAGAGATTCCTTTCCAGCTTGGGCTGTCAAAAGTGGATCTTCGGAAGATGCTAAAATCCAGTCTATCTGGGGTGGATAAGTCCATTGCTGCGATGTATAAGAAATTGCAGAAGAACATGACTTCAGAAGAACTGTTACCTTCCTTATGGGATAAATGCAAGAATTTACCAAAATTTCTCCTGGAACTAAGTAAAAATGAATGCAACAAATTCTGA 549 0.3971 MEQYIAGQSRDLVDQAYTKFVSIMFVTLEKLAQTDPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLILNNVPPEEIPFQLGLSKVDLRKMLKSSLSGVDKSIAAMYKKLQKNMTSEELLPSLWDKCKNLPKFLLELSKNECNKF. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00592 182 PANTHER SEC3/SYNTAXIN-RELATED 1 165 - -
Seca4g00592 182 Pfam Exocyst complex component Sec3 7 165 IPR019160 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00592 Seca-Chr4 9756025 9763445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00592 1 165 EF-hand Containing Proteins AT1G47550 89.697 6.30e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00592 K19983 - ccaj:109790967 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00592 4 9756025 9763445 Seca4g00592 4 9756025 9763445 ECH
Seca4g00592 4 9756025 9763445 Seca4g00592 4 9756025 9763445 PCT