Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00562 ATGGCTTCGTCCACTCTCATCTCCGACACTCAGCCATGGAAGGACTTGAAGGCCCATGTGGAGGACATCAAGAAGACCCATCTCCGTGATCTATTGACCGATGATGGGAGGTGCCAATCGATGCTGGTTGACTTTGATGGCATTCTGCTGGACTATTCAAGGCAACAAGCCACTCCTGAAACAATCCAGAAGCTCTTTAAATTGGCGGAGGCTGCATCCCTCAAAGAAAAGATAAACCGTATGTACAGCGGGGAACATATAAACAGCACTGAGAATAGATCAGTGCTTCATATAGCCCTTCGTGCTTCAAGGGATGCTGTTATACAGAGTGATGGAAACAATGTTGTCCCTGAAGTTTGGAAAGTTCTTGACAAGATCCAGGACTTCTCTGAGCGGGTTCGCAATGGATCCTGGGTTGGAGCTACAGGAAAGGCTCTGAAGGACGTTGTTGCAATTGGTATTGGTGGGAGCTTCTTAGGTCCACTGTTTGTACACACTGCACTTCAAACAGAACCGGAAGCTATTGAATCTGCTAGGGATCGTCAGCTGCGCTTTCTTGCAAATGTTGATCCCATTGACATTGCTAGAAATATCACTGGATTAAATCCTGAAACAACGCTCGTTGTGGTTGTTTCAAAGACTTTTACAACAGCTGAAACCATGCTGAATGCTCGAACTCTTAGAGAATGGATTTCATCTGCACTTGGGCCCTCTGCAGTTGCAAAGCATATGGTGGCTGTCAGCACTAATCTCACGCTTGTAGAAAAGTTTGGCATTGATCCTAACAATGCTTTTGCATTTTGGGACTGGGTTGGTGGTCGGTATAGTGTTTGCAGTGCTGTTGGGGTGTTGCCATTATCTCTACAGTATGGTTTCTCAGTAATAGAGAAGTTCTTAAGGGGAGCTTCCAGCATCGATCAACATTTCTATTCTCAGCCATTTGAAAGGAATATCCCTGTGAGTGTCCCTTTGGGTTTATTAAGCATATGGAATGTTTCATTTCTTGGATATCCTGCCAGAGCCATCTTACCTTATAGTCAAGCCCTTGAGAAGTTTGCCCCTCACATTCAACAGGTTAGCATGGAGAGTAATGGCAAGGGTGTTTCAATTGATGGTGTTCCTCTACCATTTGAGGCTGGTGAAATTGATTTTGGTGAACCAGGAACCAATGGGCAGCATAGCTTTTATCAGCTCATACATCAGGGGCGTGTGATTCCTTGTGATTTTATTGGAGTTGTGAAAAGTCAGCAACCTGTCTTTCTGAAAGGTGAAGTAGTGAGTAACCATGATGAACTAATGTCCAACTACTTTGCACAGCCCGATGCCCTTGCATATGGGAAGACAGCAGATCAGCTGCAAAAGGAAAATGTTTCCCCACATCTTATTCCTCACAAGACATTCAGCGGAAATCGACCTTCTCTCAGCCTTCTGCTTCCATCATTGAATGCTTACAATATTGGGCAGGTATGA 1470 0.4476 MASSTLISDTQPWKDLKAHVEDIKKTHLRDLLTDDGRCQSMLVDFDGILLDYSRQQATPETIQKLFKLAEAASLKEKINRMYSGEHINSTENRSVLHIALRASRDAVIQSDGNNVVPEVWKVLDKIQDFSERVRNGSWVGATGKALKDVVAIGIGGSFLGPLFVHTALQTEPEAIESARDRQLRFLANVDPIDIARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISSALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVIEKFLRGASSIDQHFYSQPFERNIPVSVPLGLLSIWNVSFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVFLKGEVVSNHDELMSNYFAQPDALAYGKTADQLQKENVSPHLIPHKTFSGNRPSLSLLLPSLNAYNIGQV. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00562 489 Gene3D - 97 296 - -
Seca4g00562 489 FunFam Glucose-6-phosphate isomerase 297 489 - -
Seca4g00562 489 Pfam Phosphoglucose isomerase 51 489 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 CDD SIS_PGI_2 338 445 IPR035482 -
Seca4g00562 489 FunFam Glucose-6-phosphate isomerase 6 99 - -
Seca4g00562 489 PRINTS Glucose-6-phosphate isomerase signature 345 366 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 PRINTS Glucose-6-phosphate isomerase signature 469 487 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 PRINTS Glucose-6-phosphate isomerase signature 149 168 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 PRINTS Glucose-6-phosphate isomerase signature 265 283 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 ProSitePatterns Phosphoglucose isomerase signature 1. 269 282 IPR018189 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 Gene3D - 13 488 - -
Seca4g00562 489 Hamap Glucose-6-phosphate isomerase [pgi]. 45 489 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 CDD SIS_PGI_1 120 288 IPR035476 -
Seca4g00562 489 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 10 489 IPR001672 GO:0004347|GO:0006094|GO:0006096
Seca4g00562 489 SUPERFAMILY SIS domain 8 488 IPR046348 GO:0097367|GO:1901135
Seca4g00562 489 FunFam Glucose-6-phosphate isomerase 100 296 - -
Seca4g00562 489 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 5 488 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00562 Seca-Chr4 9129008 9137702 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00562 K01810 - gmx:100807719 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00562 4 9129008 9137702 Seca4g00562 4 9129008 9137702 ECH