Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00559 ATGTTGGAAACAAAAACGGCACATCCAAATGCGAGAAGAAAAGCCTCATCACCTAACCTCATACACAGCTCAGAGCTCTGTGTAGTTCTCGCTGAGAGAGAAAGAGAGAGATATGGCGGCAGATGCAGCTTGCTGTGGAACAAAGTTCTGGTTGTACGTGATGATGATTATTGGTTTGGTATGCTTCGCTGGCCTAATGGCTGGACTCACTCTTGGACTCATGTCTTTGGGCCTCGTCGACCTCGAGGTTCTCATCAAATCCGGTCGTCCTCAAGATCGCATCCATGCTTGTATTGTACCTTTCACTCAATTCTTTTCAATTCCCTCTTCCACTCTTCTAACCCATCCTTCTTCGCAGCTAAAATTTTCCCTGTGGTTAAGAATCAGCATCTTTTGCTTTGCACACTTTTAATTGGAAACTCCTTAGCCATGGAGGCTCTTCCTATTTTTCTTGATGCACTTGTGCCTCCTTATGCAGCTGTCTTGTTTTCGGTTACCCTCATCCTCTTGTTTGGAGAGATATTGCCGCAAGCAATTTGTACTCGATATGGGTTGACTGTTGGAGCAACACTGGCCCCACTCGTTCGTGTTCTTCTTCTTGTGTTCTACCCTATCTCTTATCCGATTAGCAAGATTCTTGATTGGATGTTGGGTAAAGGACATGCTGCACTTTTAAAGAGGGCAGAGCTCAAGACTTTTGTAAATTTTCATGGGAATGAGGCTGGGAAAGGAGGAGACTTAACACATGATGAGACGACCATCATTACTGGTGCACTTGAATTGACTGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAAGGCATTTTCCCTTGATCTGGATGCAACTCTAAATTTGGAGACCCTGAATTCAATAATGACAATGGGTCATAGTAGAGTTCCAGTTTATGCAGGAGAGAAAACAAACATTATTGGACTTGTTCTGGTTAAAAATCTCTTTATGGTTGATAAAAAGGCCGCAGTTCCTCTCAGAAAAATGATCATCAGAAAAATTCCTCGATATGCTGTTATAAATCACAAGTTACTCATGATTTCCTCTTCATCCTGCAGTGTTTCAGAGAACATGCCTCTCTATGATATACTGAATGAATTTCAGAAGGGTCACAGTCATATTGCCGTTGTGTATAAGGATCTTAATGATAAAAAAGAAGCATCCAAAAAGGGTAAAGATGGGGAACAACTTGAGTCTAAGAAGAAAGTAAAAAGTGCACCCTTGGATAAAGGTACTCAATTGGAGTCACACGATACTTTGACTGCTGTTAGTAAGATTGATGGTGGTCCACAGGTAAAAAAAAGTCCACAAGCAACTCCTGCTTTTAAAAAGCGACATAGAGGTTGTTCATATTGCATCCTGGACATTGATAATGCTCCCCTGCCGGTGTTTCCACCCAATGAAGTGGTTGTTGGTGTTATTACAATGGAGGATGTCATTGAGGAGCTTCTTCAGGTTGCATGCATGCTATCATTGCCTTATATGCTGATCCATCTTCATCAAATCTGTGTATTTCAGGAGGAGATACTAGATGAAACTGATGAATATGTCAATATCCATAACAAGATAAAAGTTAACATGAATGCTTCCAAGGAGAAGGCTCCTGATGCAAATCTGTTGCAGCCTCCTTTAGCAGTTCAAGGACACACACCAACTAATTCAATTTCTACAGCCACTTCTGTAACAGGCTCACCTACCACGATTGATCAAATCTCTGAAAGTGAGTCACTCAGGAATCAATAA 1758 0.4152 MLETKTAHPNARRKASSPNLIHSSELCVVLAERERERYGGRCSLLWNKVLVVRDDDYWFGMLRWPNGWTHSWTHVFGPRRPRGSHQIRSSSRSHPCLYCTFHSILFNSLFHSSNPSFFAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDALVPPYAAVLFSVTLILLFGEILPQAICTRYGLTVGATLAPLVRVLLLVFYPISYPISKILDWMLGKGHAALLKRAELKTFVNFHGNEAGKGGDLTHDETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTMGHSRVPVYAGEKTNIIGLVLVKNLFMVDKKAAVPLRKMIIRKIPRYAVINHKLLMISSSSCSVSENMPLYDILNEFQKGHSHIAVVYKDLNDKKEASKKGKDGEQLESKKKVKSAPLDKGTQLESHDTLTAVSKIDGGPQVKKSPQATPAFKKRHRGCSYCILDIDNAPLPVFPPNEVVVGVITMEDVIEELLQVACMLSLPYMLIHLHQICVFQEEILDETDEYVNIHNKIKVNMNASKEKAPDANLLQPPLAVQGHTPTNSISTATSVTGSPTTIDQISESESLRNQ. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00559 585 MobiDBLite consensus disorder prediction 390 413 - -
Seca4g00559 585 ProSiteProfiles CNNM transmembrane domain profile. 119 251 IPR002550 -
Seca4g00559 585 PANTHER METAL TRANSPORTER CNNM 117 491 IPR045095 GO:0010960
Seca4g00559 585 MobiDBLite consensus disorder prediction 550 585 - -
Seca4g00559 585 MobiDBLite consensus disorder prediction 547 585 - -
Seca4g00559 585 CDD CBS_pair_CorC_HlyC_assoc 265 383 IPR044751 -
Seca4g00559 585 Gene3D - 249 400 IPR046342 -
Seca4g00559 585 MobiDBLite consensus disorder prediction 390 415 - -
Seca4g00559 585 Pfam Cyclin M transmembrane N-terminal domain 118 249 IPR002550 -
Seca4g00559 585 SUPERFAMILY CBS-domain pair 255 490 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00559 Seca-Chr4 9049290 9055178 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00559 K16302 - gmx:100804572 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00559 4 9049290 9055178 Seca4g00559 4 9049290 9055178 ECH