Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00555 ATGCGAATTCCCAAGAGGCCTCTCTCATTCTCTCTCTCTAACTTCTCTCCTCAGTTTCCACCTCTTTTGTCTTCTCGCCTTTCCTTTGCTTCCGGAATCTGCGCCAAACCTCCTCGCTCCCTCGCCAACACCATACCAACAGGGGCTAACCAGTTGCATGCTCAATATTCAATGGACGAGAACCATGAAACTGGTATTCGTGACTCAAGATCAATGGATTTGCCTGGCAGTGATAGTGGCAAACGGCCATGTGTATGGTCATCATCTCCTGAACATGGATGTAAAACTAATATAGGCAAACAGATATTTTGTAACCGGTCACTGAATATGAAGAACATTGTTGCTGTGGGATTTGACATGGATTATACTCTGGCACAATACAAGCCTGAAACTTTTGAATCTCTCGCTTATCAAGGAACAATTAAAAAGTTGGTTTATGATTTGGGGTACCCTCGTGAGTTACTGAATTGGTCTTTTAACTGGAAGTACATGGTCAGGGGCTTGGTTCTTGACAAAAAAAGAGGCAACATCTTGAAGATGGATCGCCACAAGTATGTGAAAGTAGCCTATCATGGATTTAAAGAGTTGTCAAAAGAAGATAAAGTTGGGACCTATGGAAATACTTTAGTGCGAGATTCCTTTGATGAGCCAGACTATGCTCTAATTGATACACTCTTTTCGCTCGCGGAAGCCTACTTGTTTGCTCAACTGGTTGACTTTAAGGATTGCAATCCTGGAAAGATTCAAGAGGGCGTTGATTATGCTCGCATGTATAAAGATGTTCGAGCTGCAGTTGATTTGTGTCACCGTGATGGAACATTGAAGCAAATGGTTGCTAAAGATCCCAAAAGGTATATTAATGAAGACGCCTCGCTAGTGCCCATGCTTGAAATGCTCAGAGAATCTGGGCGTGCAACATTTTTAGTGACAAATAGTTTATGGGACTATTCAAACATTGTCATGAATTTCCTCTGTGGATCCAGTATGGCAGATGGCAGTAACACTTTTGACTGGCTTCAATACTTTGATGTTGTTATCACTGGCAGTGCAAAGCCAGGATTTTTTCACGAGGAAAATCGTGCCAACCTATTTGAGGTTGTGCCTGAGACTGGAATGCTACTTAATACAGATAATGGTTCTCCTATGCCTCAGGTTAGCACTATAGCACATCATTTTATTCATTCCTGTATATATGGTTTAAAGATTTGTTTTATTTTTTTAATTGAAAGGTGGGTGACATCTCATCAAGGTTATTCACAGAAGCAAAGAATCATGCTTGTCAAGTTTTCCAGGGCGGCAGCGTTGGTCATCTTCATAAATTGCTTTCCATTGAATCAAGTTCACAGGTTCTGTATGTTGGGGATCACATTTATGGAGATATACTTCGCAGCAAAAAGGTTCTTGGATGGAGAACAATGCTTGTAG 1425 0.4126 MRIPKRPLSFSLSNFSPQFPPLLSSRLSFASGICAKPPRSLANTIPTGANQLHAQYSMDENHETGIRDSRSMDLPGSDSGKRPCVWSSSPEHGCKTNIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYQGTIKKLVYDLGYPRELLNWSFNWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKEDKVGTYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDCNPGKIQEGVDYARMYKDVRAAVDLCHRDGTLKQMVAKDPKRYINEDASLVPMLEMLRESGRATFLVTNSLWDYSNIVMNFLCGSSMADGSNTFDWLQYFDVVITGSAKPGFFHEENRANLFEVVPETGMLLNTDNGSPMPQVSTIAHHFIHSCIYGLKICFIFLIERWVTSHQGYSQKQRIMLVKFSRAAALVIFINCFPLNQVHRFCMLGITFMEIYFAAKRFLDGEQCL. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00555 474 SUPERFAMILY HAD-like 100 378 IPR036412 -
Seca4g00555 474 Gene3D - 98 147 IPR023214 -
Seca4g00555 474 Gene3D - 261 403 IPR023214 -
Seca4g00555 474 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 99 389 IPR008380 -
Seca4g00555 474 MobiDBLite consensus disorder prediction 61 86 - -
Seca4g00555 474 Pfam 5' nucleotidase family 102 378 IPR008380 -
Seca4g00555 474 NCBIfam HAD-IG family 5'-nucleotidase 102 376 IPR008380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00555 Seca-Chr4 9024859 9030420 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00555 - - gmx:100793438 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00555 4 9024859 9030420 Seca4g00555 4 9024859 9030420 ECH