Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00548 ATGGGCGAGCAAACGCGAGCTCAAGGACAATCCCTAACCCGAACCCAAATTGAACCCAAACCCCAACCCCAGCCTCAGCCTCAAGGGGTTTCCTCCGCCGCCGCAACCGCCACCACCGTCGCCGGCGCTATCATTCAATCAGAGTCCGAACTAAGCAATGCTCCCTCGCAAACCAATACTCCGGCTTCGAAAATCCCTCTCCGTCCCCGGAAGATCCGGAAGGTCTCTCCGGACCCGACTACCTCCGAATCTCAAACGGAAACCCCAAAATCCACCTCCACCGGCGGCAAGTCTTGCGGGCGTAACAACAAGATGGCTCAACAGCAACGAGCCCTAGTTGTTCCAAGAATGGTGGCTAGGTCACTGTCGTGCGAAGGCGAGGTGGAGATCGCACTGCGTTACCTTCGCAACGCGGACCCACTCCTCTCGCCTCTAATCGACATTCACCAACCCCCTACCTTCGATAACTTCCACACCCCATTCCTTGCCCTAACACGAAGCATCTTGTACCAGCAGCTTGCATATAAAGCCGGTACATCGATCTACACCCGCTTTATCGCTCTCTGTGGTGGGGAAGCTGGTGTTGTTCCTGAAACCGTTCTTGCCCTAACTCCTCAGCAGCTTCGCCAAATTGGGGTTTCAGGGAGAAAGGCTAGCTATCTACATGATTTGGCTAGGAAATACCAGAATGGAATACTCTCTGATTCAGCCATTGTAAATATGGATGATAAATCACTTTTCACCATGCTCACTATGGTCAATGGGATTGGCTCTTGGTCTGTCCATATGTTCATGATCTTCTCCCTCCATAGACCTGATGTTCTTCCCATCAACGATCTTGGTGTTCGCAAAGGGGTTCAGCTTCTTTATAATCTTGAAGACTTGCCTCGACCCTCTCAGATGGACCAATTGTGTGAGAAATGGAGGCCTTATCGCTCGGTTGCTTCCTGGTATATGTGGAGATTTGTTGAAGCAAAGGGAACTCCTTCCAGTGCAGTGGCTGTTGCCACTGGTGCCGGCTTGCAGCAGCACCAACAGGAGCAGCAGCAACAGCAGCAGCAGCAGCACCCTCAACAGCCACAGCTTCTGGATCCCATAAATAGCATGTTTAATCTTGGGTTATTCTCATCAAGATATGCACTTTCATCTTATGGAGGCATGCTGTAA 1167 0.5141 MGEQTRAQGQSLTRTQIEPKPQPQPQPQGVSSAAATATTVAGAIIQSESELSNAPSQTNTPASKIPLRPRKIRKVSPDPTTSESQTETPKSTSTGGKSCGRNNKMAQQQRALVVPRMVARSLSCEGEVEIALRYLRNADPLLSPLIDIHQPPTFDNFHTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGEAGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYNLEDLPRPSQMDQLCEKWRPYRSVASWYMWRFVEAKGTPSSAVAVATGAGLQQHQQEQQQQQQQQHPQQPQLLDPINSMFNLGLFSSRYALSSYGGML. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00548 388 MobiDBLite consensus disorder prediction 78 107 - -
Seca4g00548 388 MobiDBLite consensus disorder prediction 27 64 - -
Seca4g00548 388 Gene3D - 134 321 - -
Seca4g00548 388 FunFam DNA-3-methyladenine glycosylase II 157 271 - -
Seca4g00548 388 CDD ENDO3c 161 322 IPR003265 GO:0006284
Seca4g00548 388 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 8 332 - -
Seca4g00548 388 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g00548 388 FunFam Probable DNA-3-methyladenine glycosylase 2 257 321 - -
Seca4g00548 388 Pfam HhH-GPD superfamily base excision DNA repair protein 166 309 IPR003265 GO:0006284
Seca4g00548 388 SUPERFAMILY DNA-glycosylase 150 322 IPR011257 GO:0003824|GO:0006281
Seca4g00548 388 MobiDBLite consensus disorder prediction 1 107 - -
Seca4g00548 388 Gene3D Hypothetical protein; domain 2 158 271 - -
Seca4g00548 388 SMART endo3end 169 324 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00548 Seca-Chr4 8971295 8975118 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00548 K01247 - gmx:100790760 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00548 4 8971295 8975118 Seca4g00548 4 8971295 8975118 ECH