Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00535 ATGGGTGTCATCTCTGCCAACTCTTACTGCTCTGTTGGATCCTACAAACCCTACCTCTCTGCTCACTCTCTCCGCCATTCCGCTCTCATTTCCATTTCTTCTGCGTCATGCCCACTCAGAGTATCATGTCTCGCCTCTTCTGCTGTTTCTGCCGAATCTCCCGTCACTGCGAAGGTTGGACAGAAAGATTTTCTTCACATAGATGATTTTGATAAGGACGCTATTTTGAAGATATTGGATCGAGCCATTGAGGTCAAGACATTGCTTAAATCAGGGGACAGGTCATTTCGACCTTTTGAAGGGAAGACAATGTCGATGATATTCACAAAGCCATCGATGAGAACTCGGGTTTCATTTGAGACTGGCTTTTCCTTGTTAGGTGGCCATGCTGTATATTTAGGACCTGACGACATTCAAATGGGCAAGCGAGAGGAGACTCGTGATGTTGCTCGAGTTTTGTCTCGCTATAATGACATCCTTATGGCTCGTGTTTTTGCTCATCAGGACATACTTGATCTTGCAAAGTATGCAACTGTGCCAGTCATCAATGGTTTGACAGACTACAACCATCCCTGTCAGATAATGGCTGATGCCCTTACTATGATTGAGCACATTGGTCGGTTTGAAGGAACCAAGGTTGTCTATGTTGGAGATGGAAATAATATTGTTCACTCCTGGTTGTTAATGGCATCGGTAATTCCTTTTCACTTCGTTTGCGCGTGTCCAAAAGGTTTTGAACCTGATGCAAAAACAGTTGAGAAGGCAAGGAAGGCTGGATTCAGCAAGATTGAGATATCTCATGATCCCAAAGAAGCTGTTAGAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCGGCATACCGCCGTGAAGTGTTTAAAGGGTTTCAGGTGGATCAAAGTCTTATGGATATGGCTGGTTCAAAGGCATTTTTCATGCATTGCTTACCAGCAGAAAGAGGGGTGGAGGTGACAGATGAAGTTGTTGAAGCTCCAAATTCAATAGTCTTCCCGCAAGCTGAAAACCGAATGCATGCACAGAATGCCATAATGCTCCATGTACTTGGCAAGTAG 1095 0.4484 MGVISANSYCSVGSYKPYLSAHSLRHSALISISSASCPLRVSCLASSAVSAESPVTAKVGQKDFLHIDDFDKDAILKILDRAIEVKTLLKSGDRSFRPFEGKTMSMIFTKPSMRTRVSFETGFSLLGGHAVYLGPDDIQMGKREETRDVARVLSRYNDILMARVFAHQDILDLAKYATVPVINGLTDYNHPCQIMADALTMIEHIGRFEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGFSKIEISHDPKEAVRGADVVYSDVWASMGQKEEAAYRREVFKGFQVDQSLMDMAGSKAFFMHCLPAERGVEVTDEVVEAPNSIVFPQAENRMHAQNAIMLHVLGK. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00535 364 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 61 363 IPR036901 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 FunFam ornithine carbamoyltransferase, chloroplastic 62 197 - -
Seca4g00535 364 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 62 203 IPR006132 GO:0006520|GO:0016743
Seca4g00535 364 Gene3D Aspartate/ornithine carbamoyltransferase 62 192 IPR036901 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 NCBIfam ornithine carbamoyltransferase 62 362 IPR002292 GO:0016743
Seca4g00535 364 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 315 324 IPR006130 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 108 127 IPR006130 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 190 201 IPR006130 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 327 350 IPR006130 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 Gene3D Aspartate/ornithine carbamoyltransferase 193 358 IPR036901 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 PRINTS Ornithine carbamoyltransferase signature 279 289 IPR002292 GO:0016743
Seca4g00535 364 PRINTS Ornithine carbamoyltransferase signature 139 152 IPR002292 GO:0016743
Seca4g00535 364 PRINTS Ornithine carbamoyltransferase signature 341 352 IPR002292 GO:0016743
Seca4g00535 364 PRINTS Ornithine carbamoyltransferase signature 106 120 IPR002292 GO:0016743
Seca4g00535 364 PRINTS Ornithine carbamoyltransferase signature 179 193 IPR002292 GO:0016743
Seca4g00535 364 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 61 363 IPR024904 GO:0004585|GO:0006591
Seca4g00535 364 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 209 360 IPR006131 GO:0006520|GO:0016597|GO:0016743
Seca4g00535 364 FunFam Ornithine carbamoyltransferase 198 349 - -
Seca4g00535 364 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 58 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00535 Seca-Chr4 8832491 8835839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00535 K00611 - gmx:100796780 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00535 4 8832491 8835839 Seca4g00535 4 8832491 8835839 ECH