Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00502 ATGGACGTCGATCCTCGTCAATACGAAAACATCGCTATAAATGATAATGACATCCACAACATTGTTCTGTCATATCTTATACATAATTGCTACAAAGAATCAGCGGAGTCATTCATCGCGAGCACTGGGATGAAGCAGCCGATGGATTATTTAGAGGACATGGAGAAAAGAGAAAGTAGCCTATTATACCTTGATGGTAAATTTCATTTGTCTTCAGGAATCTTTCACTTTGCACTAGAGGGAAATGCACTTAAGGCCATTGAGCTTACTGAACAGCTGGCGCAGGGTATTCTAGAGAACAATAAAGATTTGCAGTTTGATCTTCTAAGCCTTCATTTTGTTGAGCTTATCTGTTCTAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTCGGAAAGGAGCACAAATATATGGAGAAACTTGAGGATTTTATGGCTCTTCTTGCTTATAAGGAACCAGAGAAATCCCCTATGTTTCATCTCCTTAGCTTAGAGTATCGGCAACAAGTTGCAGATAGTTTGAATCGAGCTATTCTTGGTTGGTTCACTTGA 567 0.4004 MDVDPRQYENIAINDNDIHNIVLSYLIHNCYKESAESFIASTGMKQPMDYLEDMEKRESSLLYLDGKFHLSSGIFHFALEGNALKAIELTEQLAQGILENNKDLQFDLLSLHFVELICSRKCTEALEFAQTKLSPFGKEHKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILGWFT. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00502 188 PANTHER RAN BINDING PROTEIN 9-RELATED 6 184 - -
Seca4g00502 188 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 79 124 IPR006595 -
Seca4g00502 188 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Seca4g00502 188 SMART ctlh 67 124 IPR006595 -
Seca4g00502 188 SMART toby_final6 120 188 IPR013144 -
Seca4g00502 188 SMART Lish 14 46 IPR006594 GO:0005515
Seca4g00502 188 Pfam CTLH/CRA C-terminal to LisH motif domain 74 184 IPR024964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00502 Seca-Chr4 8218181 8221189 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00502 K23338 - gmx:100801338 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00502 4 8218181 8221189 Seca4g00502 4 8218181 8221189 ECH