Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00494 ATGGATGAGGAGAATGGTTACGGTGGGAGTAGCAGCTCTAACTTGGAGACTTTGAAGGCAGAGAGATCGGTGTGGCTAATGAAGTGCCCTTTGGTAGTGGCCAAGTCATGGCAGAATCATCCTCCTTCCCAACCTCTTGCTAAGGTTGTACTCTCCCTTGATCCTCTTCAACCCGAAGATGATACCTCTGCTCTCCAGGCTGTCATCATTCTGTGGACAAGCCCCATTTTTTTCTGGCCAATCCCTGCATTTTCCAGCCAGTTTACAATGGAGATGGCTGGCTCTGAAGCTATAAATATGCCAAAAACTTATTCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGTGTCTTCTCTGAGGCAAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAATATGGCAAATTGTGCCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAGATACAGGTTATCGATAATGATCGTGGAGTTCTAATGAGGCCAATGCCTGGAATGGTTGGTCTAGTTTCATCCAATTCTAAGGTACCCTATTTTTGTATACATTTTATGAGTGAGATGAATAATATTTGTTCCAAGGAGATAGTTTGGTCCTTCAATCGTGTATATGCATGGAATGATTCTGTGAGGATTTTTCTTATTTTTATGAAACTCCCACAGGATAAGAAGAAGACACAGCCAGTTAAACAATCTGATACAAAGAGAACAAGAAGGGACCGTGGAGAGCTGGAGGATATAATGTTCAAACTATTTGAAAGACAGCCTAATTGGGCCTTGAAGCAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTAAAAGAGATCCTGAATGAACTGTGTGTGTACAATAAAAGAGGTGCCAATCAAGGAACTTACGAGTTGAAGCCTGAATACAAGAAATCTGTGGAAGATACAGGCGCTGACTAA 984 0.4157 MDEENGYGGSSSSNLETLKAERSVWLMKCPLVVAKSWQNHPPSQPLAKVVLSLDPLQPEDDTSALQAVIILWTSPIFFWPIPAFSSQFTMEMAGSEAINMPKTYSLNMFKDFVPMCVFSEASQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMVGLVSSNSKVPYFCIHFMSEMNNICSKEIVWSFNRVYAWNDSVRIFLIFMKLPQDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAD. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00494 327 CDD TFIIF_beta 14 141 - -
Seca4g00494 327 SUPERFAMILY "Winged helix" DNA-binding domain 253 319 IPR036390 -
Seca4g00494 327 Gene3D - 253 320 IPR036388 -
Seca4g00494 327 Pfam TFIIF, beta subunit HTH domain 255 318 IPR040450 -
Seca4g00494 327 FunFam General transcription factor IIF subunit 2 253 320 - -
Seca4g00494 327 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 10 191 IPR003196 GO:0005674|GO:0006366|GO:0006367
Seca4g00494 327 SUPERFAMILY Rap30/74 interaction domains 12 142 IPR011039 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00494 Seca-Chr4 8063361 8070459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00494 K03139 - gmx:100788473 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00494 4 8063361 8070459 Seca4g00494 4 8063361 8070459 ECH