Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00486 ATGGGAGCTCTTGCTACATTAGCCCCTTGGACTACCGAAGACGATCTTTTGCTCAAGAACGCTGTTGAGGCTGGTGCTTCCTTAGAGTCACTTGCGAAGGGTGCAGTGCAGTTTTCTCGAAAATATACTATTAGAGAAATACAAGATAGATGGTATTCTCTCCTCTATGATCCTATTATATCTGCAGAAGCCGCTGCACGTATGGCAAGCTTTGAGCTTTCTACTTCGCCTCTCCCATCGAAGTTCTTTAAGTTTGGACACTCAAAAGAACGTAAAATTGTTTCTGTTAAGAGAAAAGCTGAAAGTGTGCGCAATTCTTATTATGCTATGCGTAAAAGGTTATGTAATGACACATTATCTTCCATGGACTTAAGTTTTCTAGTTGATCCAGAAAATGAAAATTATGTTCTAAATGGAAGTGAGCCGCCTTTACCTGAAAACTGCATACCTGAAGGTGATGCTTCGAATCAGTTTTCAAATCTTGATCCGCAACACTATGGTTTTCCAGAAAATATCATGGATGATGATGTTGCAATTAATGGAGTTACTGCTCATGCATTTTACACTGGAGTTGATGATCCAGTTGAAGAGAATTTCCTCGTTGAGCAAAAAAATATACTTCAGGAAGAACCTCAAATTCTTGAAGATAATGTGTCTTTGAATGGAACTGACGAAGAGTTGGGTGTTCCAAAAGAATTTGCTATTGATAACTTGATTGGAGATGATAATTTAGAGGAATTGCCTTTGTCTGCATTTGATCATATTGACAATGACCCTGGAAATTTGTGTTCTGAGTTTGATGAAAATCATGCATTTGATTCACCCGAGTTAGAATGTGGAACATCATTTAACACCTTACAGTTATCTCCACTTCCTGAAATGCCAATCTGGAGAACAGATGAGGGGATTCAAGAACCTGACATTCCATGTGATGGTTTAAAAGATTCTGTTGATTGTGGGGAGGCTTATTTGGCTGAACTGTCCAATTCACTCCTCAACTTCACTAATGAGGAAGAACTATTTCTGATGGATGTTGATGGAAAAGATGGGATTGATAAGTCTTATTATGATGGTCTGAGTTCACTTCTACTAAATTCTCCAGCTGATGTTAGTCAAAATCAGATACCTGAAAAGGCTGAAACAGAGTCGTCAGTGGCCTCACATGAACATGTTACAAATCTGCCAGTTTCATGTCATGCAGAAGTAGATGACAAGCCAGGGTCACAATCTAGTGGTGTGCAAGTAGTTCACAAATTAGAGTTCCAAATGCCATCTTCTGCCTCAGCTAAAGACCCTCAATTTCCTGAACTTATTAATGGAGTTATTTGCTGTACACTAAATACTGAGGACCCAGAAGTTCCATCCAATGATGATGTTTTCCTACCCTTTGATGTGCCTCCTTCAACATTTTCCTATCCATCTAAATCAACTTCTAAAGATTCCAACAAACCAATTTCATCATCTGTTCAGGATTATGGATATAGAGCTAGTGAAAGAGGTAAAATTTTGATGCAGGTTGAACATAAAAACTCAATAGAATCTCATGCATCTTCTCAGGTGACTGGATCTCCTTGCCTCTCAGGACCTGTTTGTGGTTCTAAGATGAAATGTGAGTTGCCGAATAATAGTCATGCATCACACACAGTGTCTAGGAGTGCAGTTGTTGTTTCTGGTGGCTTAGGTGGAAACAGTAATGCTGCAAACACAACCAATGCTCTTCTGAATGCAAATTCAAAGGAAGAGCCTACCAATGTTGGCTTGGGAAAGCACCAAAGCAATCCAGTGACAAATTTTTTCATTGAGAAACCGAACCTCAATTCTGATGACTTCAGAAATCACCTCCAACCTAATGGTTCTAGTGTGAAACATGAACATGATGTAGCTTTGCCACTTGAAGGTCATGCTCAAGTGGGATCCTCAGATGTTCTTGAGTCAGAGCTGGTGGTTAATCCTCCAACAATGGACGGGGAAGAGCAATATATAGAAAGTGATGATGATGTTCCTTATTATTCTGACATAGAAGCAATGGTTCTTGATATGGACTTGGATCCTGATGATCAAGATTTGTATTACAATGAGGAAGTATCAAGATATCAACTCGAGGAAACTAAGCGAGCTATCATAAGGCTGGAGCAGGGTGCTCATTCTCATATGCAGAGAGCCATTGCCTCACATGGAGCATTTGCTGTGTTATATGGTCGCCACTCAAAGCATTATATTAAGAAACCTGAGGTTTTACTTGGACGAGCAACAGATTCTTTTCATGTAGACATTGACTTGAGCAAAGGAGGGTATGCTAATACAATATCTCGACGTCAGGCAATTATAAAGATGGAAAAAGATGGATCTTTCTACATTAAAAACTTCGGCAAGAGTTCAATTTTGGTAAACAACAAAGAAGTGCACACTGGTCAGTCTCAAAGACTGCATTCCAATTATCTGATTGAGTTGAGGGGCATGCCATTCATATTTGAGACAAATCAAGATTGTGTGAAGCAGTACCTGGATCATAGTACTGACAATCTCTAG 2529 0.3946 MGALATLAPWTTEDDLLLKNAVEAGASLESLAKGAVQFSRKYTIREIQDRWYSLLYDPIISAEAAARMASFELSTSPLPSKFFKFGHSKERKIVSVKRKAESVRNSYYAMRKRLCNDTLSSMDLSFLVDPENENYVLNGSEPPLPENCIPEGDASNQFSNLDPQHYGFPENIMDDDVAINGVTAHAFYTGVDDPVEENFLVEQKNILQEEPQILEDNVSLNGTDEELGVPKEFAIDNLIGDDNLEELPLSAFDHIDNDPGNLCSEFDENHAFDSPELECGTSFNTLQLSPLPEMPIWRTDEGIQEPDIPCDGLKDSVDCGEAYLAELSNSLLNFTNEEELFLMDVDGKDGIDKSYYDGLSSLLLNSPADVSQNQIPEKAETESSVASHEHVTNLPVSCHAEVDDKPGSQSSGVQVVHKLEFQMPSSASAKDPQFPELINGVICCTLNTEDPEVPSNDDVFLPFDVPPSTFSYPSKSTSKDSNKPISSSVQDYGYRASERGKILMQVEHKNSIESHASSQVTGSPCLSGPVCGSKMKCELPNNSHASHTVSRSAVVVSGGLGGNSNAANTTNALLNANSKEEPTNVGLGKHQSNPVTNFFIEKPNLNSDDFRNHLQPNGSSVKHEHDVALPLEGHAQVGSSDVLESELVVNPPTMDGEEQYIESDDDVPYYSDIEAMVLDMDLDPDDQDLYYNEEVSRYQLEETKRAIIRLEQGAHSHMQRAIASHGAFAVLYGRHSKHYIKKPEVLLGRATDSFHVDIDLSKGGYANTISRRQAIIKMEKDGSFYIKNFGKSSILVNNKEVHTGQSQRLHSNYLIELRGMPFIFETNQDCVKQYLDHSTDNL. 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00486 842 Gene3D - 693 839 - -
Seca4g00486 842 SUPERFAMILY SMAD/FHA domain 729 828 IPR008984 GO:0005515
Seca4g00486 842 PANTHER MICROSPHERULE PROTEIN 1 7 840 IPR037912 GO:0002151|GO:0031011|GO:0071339
Seca4g00486 842 ProSiteProfiles Forkhead-associated (FHA) domain profile. 745 801 IPR000253 GO:0005515
Seca4g00486 842 CDD FHA_MCRS1 723 827 - -
Seca4g00486 842 SMART FHA_2 744 801 IPR000253 GO:0005515
Seca4g00486 842 FunFam Microspherule protein 1 688 837 - -
Seca4g00486 842 Pfam FHA domain 746 817 IPR000253 GO:0005515
Seca4g00486 842 Pfam N-terminal region of micro-spherule protein 10 73 IPR025999 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00486 Seca-Chr4 7896283 7902907 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00486 - - aprc:113865691 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00486 4 7896283 7902907 Seca4g00486 4 7896283 7902907 ECH