Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00472 ATGAGCAAAAGACCACCACCTGATCCTGTGGCAGTGCTACGAGGCCATCGCGCTTCCGTCATGGACATTTCTTTTCATCCCTCTAAACCCATACTATTCTCAGGTTCTGCTGATGGTGAACTGCGGATTTGGGATACCCTTCGGTATCAAACACTGTCATCTGCGTGGTTACATAGTGCGGCCCATGGAATTGTTTCTGTTTCCAGTAGTTCTTCTCTTGGAACCAATAAGTTTGTCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGATTTTGGTGATGCTGGTTTGTCCAGGATTCCATCACTTACAATCAAGACAAACACTTACCACTTTTGCAAACTTTCCACGGTGAAGAATCATTGTCCTTTGTTGAAAGAAGGGACAGCGTCAAAAAATTGCCATAGAACAGAGGTAGAAGGAATGTCAGATAGAGAAAATCATGAGGTTAAGAGAGAAGAGGCTTATACCAATCAAAGTTGTTCTGAAAGCATTGAAGAAAATACGTATAATGAAGGGCTACCATACGTGGCTTTGTCAGGGGAGAACTCTTCTGAGGTTGAAATTTTGGATCTCAAGTCAGGTGAAAAATCTGTGCGACTCCCTACAAACAGCCCTAGTAACTCTTCAAGTGCTTGCAACAAAGATAGAGGGATGTGCATGGCGCTTCAATTATTTTTACCATCTGAATCGCAAGGATTTTTAAATGTCTTGGCTGGAGCTTGA 726 0.4298 MSKRPPPDPVAVLRGHRASVMDISFHPSKPILFSGSADGELRIWDTLRYQTLSSAWLHSAAHGIVSVSSSSSLGTNKFVSQGRDGTVKVWDFGDAGLSRIPSLTIKTNTYHFCKLSTVKNHCPLLKEGTASKNCHRTEVEGMSDRENHEVKREEAYTNQSCSESIEENTYNEGLPYVALSGENSSEVEILDLKSGEKSVRLPTNSPSNSSSACNKDRGMCMALQLFLPSESQGFLNVLAGA. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00472 241 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Seca4g00472 241 SUPERFAMILY WD40 repeat-like 8 216 IPR036322 GO:0005515
Seca4g00472 241 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Seca4g00472 241 SMART WD40_4 50 91 IPR001680 GO:0005515
Seca4g00472 241 SMART WD40_4 6 45 IPR001680 GO:0005515
Seca4g00472 241 Gene3D - 6 224 IPR015943 GO:0005515
Seca4g00472 241 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Seca4g00472 241 PANTHER TRANSDUCIN BETA-LIKE 3 4 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00472 Seca-Chr4 7642214 7647175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00472 10 92 Miscellaneous Gene Families AT5G08390 31.325 2.45e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00472 K24770 - gmx:100800482 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00472 4 7642214 7647175 Seca4g00472 4 7642214 7647175 ECH