Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00463 ATGTCTGCATCCGAAGCGGAGAAGAAGGTTGAGGAAGAGAAGGAGAAGGAGGTTCTCAAAGGGGGAGAGCTCTTGTTCTGTGGTGCCACGTGTTGGGATACCGTTGGTCGTAAAAAAGGCCCCGTCGACGGTAACTTGGTCTCTCCTTCACGCCTCCGTCCTCTCGTCGGCGTTGATATTCGCTTCATTGCCTCTGGTTGCGTATCTTGTCATTGCGTGGCGTTGGACGTGGAAGGGCGTTGCTATACATGGGGCCGTAATGAGAAGGGACAACTGGGTCATGGAGATACCATTCGGCGTGATAGGCCAACTGTGGTGTCTGAACTTTCCAAATACAAAGTTGTCAAAGCTGGAGCTGGGAGGAACCATTCGGTAGTTGTTACAGAGGATGGAAATTCCCTAGCCTTTGGATGGAACAAACACGGACAGCTAGGTTCAGGTTCTGTGAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTTGTGTCTGATGTAAAATATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCGTTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGATTGGTTTATGAAGCCCAGCCACGACCTCGAGCAATTGCTACTCTTGCTGGGGAAACAATTGTCAAAGTGGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCCATGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGTTGGTGTTTGGTTTTCATATCGGGCTGTCAGTGTTTTGTGAATTCCCAAGCAACTACAAATACCAGATAATTCTTTTTCAAAATTGGCTTTTTATATTTTATGAATTCTGTAGGCTAGGACATAGGGAGCAAAAGGATGAATGGGTCCCACGCCGTGTTGATGTTTTCCAGAATAGAAATGTTTTGCCTCCTGATGCAATTATATCAGCTGGTTCTGTGAATTCTGCATGTACTGCAGGTGGAGGGCAGCTGTACATGTGGGGCAAACTAAAGAACACTGGTGATGACTGGATGTATCCTAAGCCTCTAATGGATTTAAGTGGTTGGAATATAAGATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCCTCGTGCATCAGTTGGGGTCATGCTCAGAATGGGGAGCTGGGATATGGACCTGCTGGACAGAAGTCTTCAGCTGTACCGAAAAAGGTGGATATACTTGAGGGTATGCATGTAATGAGAGCAAATGTTGCTGATAGACTTGATCAGCTTGATGTATATGATGGCAAAGCTTTCAGTGAAGGTAATGAGCCCATAAACAACACTCCAGCGCCTAAGCAGGCTGCTAAAAAGGGTGCAAAGGGAGCTGCTGACAATTCGAAGAAGAGGAAAAAATCAAAAGATTCATCTGACTCAGAAGAGGAAGAGGATGCTGAAGAAAGTGACAATAGTGAGGATCAAGTTAATGGTGAGGCTGAGGTAAAAAGGTCACGTGGGGGGAAAAGTTCTGGTAAAGGTCGAGGTAAGGCATCATCCAAAAAGTCAGGTGCTGAGGGAAAAGGTTCTGGTCGAGGGCGTGGTAGCACAACAGCAAATAAGAGCAATTCTAAATCCACCCAAGTGAAATCCGGTAAGAGAGGAAGACCCCGGAAGTCATCATAA 1704 0.463 MSASEAEKKVEEEKEKEVLKGGELLFCGATCWDTVGRKKGPVDGNLVSPSRLRPLVGVDIRFIASGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDTIRRDRPTVVSELSKYKVVKAGAGRNHSVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSDVKYTACGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEAQPRPRAIATLAGETIVKVACGTNHTVAVDKNGHVYTWGFGGYGRLVFGFHIGLSVFCEFPSNYKYQIILFQNWLFIFYEFCRLGHREQKDEWVPRRVDVFQNRNVLPPDAIISAGSVNSACTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPAGQKSSAVPKKVDILEGMHVMRANVADRLDQLDVYDGKAFSEGNEPINNTPAPKQAAKKGAKGAADNSKKRKKSKDSSDSEEEEDAEESDNSEDQVNGEAEVKRSRGGKSSGKGRGKASSKKSGAEGKGSGRGRGSTTANKSNSKSTQVKSGKRGRPRKSS. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00463 567 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 236 246 IPR000408 -
Seca4g00463 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 249 IPR000408 -
Seca4g00463 567 MobiDBLite consensus disorder prediction 486 501 - -
Seca4g00463 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 79 130 IPR000408 -
Seca4g00463 567 Gene3D - 3 276 IPR009091 -
Seca4g00463 567 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 117 127 IPR000408 -
Seca4g00463 567 MobiDBLite consensus disorder prediction 446 567 - -
Seca4g00463 567 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 131 181 IPR000408 -
Seca4g00463 567 MobiDBLite consensus disorder prediction 469 485 - -
Seca4g00463 567 MobiDBLite consensus disorder prediction 539 556 - -
Seca4g00463 567 SUPERFAMILY RCC1/BLIP-II 19 427 IPR009091 -
Seca4g00463 567 PANTHER PROTEIN RCC2 6 264 IPR028641 -
Seca4g00463 567 Pfam Regulator of chromosome condensation (RCC1) repeat 130 176 IPR000408 -
Seca4g00463 567 Pfam Regulator of chromosome condensation (RCC1) repeat 187 246 IPR000408 -
Seca4g00463 567 Pfam Regulator of chromosome condensation (RCC1) repeat 78 127 IPR000408 -
Seca4g00463 567 Gene3D - 295 434 IPR009091 -
Seca4g00463 567 PRINTS Chromosome condensation regulator RCC1 signature 252 266 IPR000408 -
Seca4g00463 567 PRINTS Chromosome condensation regulator RCC1 signature 114 127 IPR000408 -
Seca4g00463 567 PRINTS Chromosome condensation regulator RCC1 signature 133 149 IPR000408 -
Seca4g00463 567 PRINTS Chromosome condensation regulator RCC1 signature 236 252 IPR000408 -
Seca4g00463 567 PRINTS Chromosome condensation regulator RCC1 signature 80 96 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00463 Seca-Chr4 7448632 7456688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00463 - - gmx:100802977 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00463 4 7448632 7456688 Seca4g00463 4 7448632 7456688 ECH