Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00373 ATGGTGGTCACGGTGAAAGTTTCGGATCTTGAAGGGAAAATAGTGGGACTTTTATTTGCTGCCAACTGGTACCCACCATGTCGTGCATTCACCCAATTGCTTGTTGGTATCTACGAGGAGCTGAAAAGCAGTGTCCCTCAATTTGAGATTGTGTATGTGTCCTCTGATGAGGACTTGGATGCATTTAATAGCTACTATGAAAACATGCCGTGGCTTGCAATTCCATTCTCTGATTTGGAAACAAAGAAAGCCTTGAACAGAAAGTATGACGTGGAAGGCATTCCGTGCTTAATTATGTTGCAACCTTCTGAAGAGAGTAATAAAGATGAGGACACAACGCTTCGCGATGGGGTTGAACTTATTTATCGCTATGGAATCCAAGCTTATCCATTTAGTAAAGAGAAGTTGGAGCAGCTGCGAGAGGCAGAGAGAGAGAAGCGTGACAATCAGACACTCGCTAATTTACTAACAAACCGCCATAGAGACTATGTTTTGGGTCAGGCCGGACTCAAACAGCAGGTACCTGTTGCTTCGTTAGTGGGTAAAACTGTTGGACTCTATTTCTCAGCTGGATGGTGCGTCCCATGCATGAAATTCACTCCCAAATTGATTTCCGTATATCAGAAGATAAAGCATGAGCTAGCTGAAAAAGGAGAGGAAGACTTTGAAATTGTGCTGATTTCAAGTGACCGTGATCAAGCATCTTTTGACTCCTACTACAGTACCATGCCTTGGTTAGCATTGCCTTTTGGAGACCCAGAGATAAAGAACCTTGCTAGGCACTTTGATGTGCAAGGGATTCCTTGCTTGGTAATTGTAGGCCCAAATGGTAAAACAATAACCGCACATGGTAGGAACTTAATAAACTTGTACCAAGAAAATGCATACCCTTTCACCAATGCCCAAGTGGAACAACTGGAGAAAAAACTTGAAGAAGAGGCTAAGGACCTTCCAAGATTGGTGTATCATGAAGGACATCACCATGACTTGAATTTGGTGTCAGATGGGAATGGGGGAGGGCCCTTTATCTGCTGTGTCTGTGATGAGCAAGGGTCCAGCTGGGCCTACCAGTGTCTCCAATGTGGCTATGAAGTGCACCCAAAGTGCGTCAAAAACTGTGGAACGTGA 1128 0.4424 MVVTVKVSDLEGKIVGLLFAANWYPPCRAFTQLLVGIYEELKSSVPQFEIVYVSSDEDLDAFNSYYENMPWLAIPFSDLETKKALNRKYDVEGIPCLIMLQPSEESNKDEDTTLRDGVELIYRYGIQAYPFSKEKLEQLREAEREKRDNQTLANLLTNRHRDYVLGQAGLKQQVPVASLVGKTVGLYFSAGWCVPCMKFTPKLISVYQKIKHELAEKGEEDFEIVLISSDRDQASFDSYYSTMPWLALPFGDPEIKNLARHFDVQGIPCLVIVGPNGKTITAHGRNLINLYQENAYPFTNAQVEQLEKKLEEEAKDLPRLVYHEGHHHDLNLVSDGNGGGPFICCVCDEQGSSWAYQCLQCGYEVHPKCVKNCGT. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00373 375 SUPERFAMILY Thioredoxin-like 5 102 IPR036249 -
Seca4g00373 375 CDD C1 344 373 - -
Seca4g00373 375 SUPERFAMILY Cysteine-rich domain 314 370 IPR046349 -
Seca4g00373 375 Coils Coil 132 159 - -
Seca4g00373 375 Gene3D Glutaredoxin 159 300 - -
Seca4g00373 375 Gene3D Glutaredoxin 2 132 - -
Seca4g00373 375 SUPERFAMILY Thioredoxin-like 172 281 IPR036249 -
Seca4g00373 375 Pfam C1 domain 325 370 IPR004146 -
Seca4g00373 375 Coils Coil 296 316 - -
Seca4g00373 375 CDD TryX_like_TryX_NRX 162 298 IPR045870 GO:0004791
Seca4g00373 375 PANTHER THIOREDOXIN 5 354 - -
Seca4g00373 375 ProSiteProfiles Thioredoxin domain profile. 141 315 IPR013766 -
Seca4g00373 375 Pfam Thioredoxin-like 12 104 IPR012336 -
Seca4g00373 375 Pfam Thioredoxin-like 181 278 IPR012336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00373 Seca-Chr4 6036412 6042524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00373 K17609 - gmx:100815038 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00373 4 6036412 6042524 Seca4g00373 4 6036412 6042524 ECH