Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00372 ATGGTTGTGCATCCAGCTCCTGGCAATACATCTGGGACGCTTGTCAATGGCATTATTAACCATTGCAACCTTCCAAATGTTGAATTTTCTAAAGAGGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAATTCAATAGCTTCTGCTCCCAGTCAAGTTCTTGTGAAGGGTTGCATTCTAGATTGTCCGTGGCATCAATTCGCCCAGGGATTGTACACAGACTGGACAAAGGCACGAGTGGGTTGCTTGTTGTTGCAAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGTACTATCAAGAGGATCTATGTTAGTCTTACTACTGGGGTACCCACTCCAGTTGCTGGGCGTGTAGAGGTTCCAATTGGTCGTGATCCTAATAACCGGATTCGAATGACTGCTGTAACAGGACCAGTTAATTCTAGAAAGGCTCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGGTACTTGCTGGGGGCAGTTGTGCACTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCCAGGTATTTGGGTGTTCCTCTACTGGGTGATGAGGTATACGGAGGGACGAAAAGCATGGTCTTGTCACTGCTACGGCCCCGAACACCTCCGAGTTTGCATAGCGAAATTATAAAAATGGTATCTAAGCTAGATAGGCCTTGCCTTCATGCTTTGACCCTCGGGTTTCAGCATCCCCATACAGGGAAGCAGGTGCACTTTTCATGCGAACCCCCTATAGACTTTGATGAAGTTTTGAGCCAGCTTCGTAAAATTGGCAGTAAGAGGGTTCCTTCAAATTGA 837 0.4564 MVVHPAPGNTSGTLVNGIINHCNLPNVEFSKEEALSDTEDSDDEFNSFCSQSSSCEGLHSRLSVASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRIYVSLTTGVPTPVAGRVEVPIGRDPNNRIRMTAVTGPVNSRKARHAASRYKVIEVLAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKSMVLSLLRPRTPPSLHSEIIKMVSKLDRPCLHALTLGFQHPHTGKQVHFSCEPPIDFDEVLSQLRKIGSKRVPSN. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00372 278 CDD PseudoU_synth_RluA_like 1 241 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca4g00372 278 Gene3D Pseudouridine synthase 39 271 - -
Seca4g00372 278 Pfam RNA pseudouridylate synthase 61 186 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca4g00372 278 ProSitePatterns Rlu family of pseudouridine synthase signature. 72 86 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca4g00372 278 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 1 264 - -
Seca4g00372 278 SUPERFAMILY Pseudouridine synthase 1 268 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00372 Seca-Chr4 6004739 6015741 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00372 K06180 - gmx:100810383 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00372 4 6004739 6015741 Seca4g00372 4 6004739 6015741 ECH