Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00366 ATGGCCTTCATCAAATCAAGGGTACGCTTGCACCACTCTCTGTCACCGCTCTTACCCCGCACTTTCAAACTATATTCTTCTTCAGCTTTAGTTTCAGAACCTCATCTTGAACATGACACAGACGACACTCCCCAAACCACTACTCTATCTCCCGAAGAGACCAATATAGCCGACAAGTTTCACACCTTGATTAAAGACCACTACCGCAAAAACCCTAACCCTAACCCCACTCCACCTTCACCCAATTTCACCATTCCTGATCTCTCCATTGATTTTTCCAAAATCTCCACCGCTCACTCAATCTCCCCCTCCATCGCCCGCCGTGTGATCGAGAAATGCGGTGGCGTCCGCCACGGGATCCCATTCCTCCAATCCCTTACCTTCTTCTATTGGGCCACCACGCTCGACGGTTTCCCCTCCTCCCCCGAGCCCTACAACGAGATTATTGACCTTGCTGGAAAGCTGAGACAATTCGATTTACCGTGGCATTTGATCGATTTGATGAAAGCTCGTGGTGTTGAAATAACCATGGACACATTCTCTGTTCTCGTTCGACGCTATGTGAGAGCTGGATTGGCTGCGGAGGCGGTGCACGCCTTCAATCGTATGGAAGATTATGGTTGCACGCCTGATAAGGTTGCATTTTCAATTGTCATTAGTAGCTTATGTAGAAAGAGAAGGGCGAGTGAAGCTCAATCATTTTTTGATAGTCTCAAGCATAGGTTTGAACCAGATGTTATAGTGTACACTAGCTTAATTCATGGTTGGTGCCGTGCTGGTAATATATCTAAGGCTGAGGAGGTTTTCAGTGATATGAAGATTGCTGGAATCAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGCTGTGTAGGTGTGGACAAATCACTCGTGCTCATGATGTTTTCTCTGAGATGATTGATGCAGGCTGTGATCCTAATGCGGTTACTTTTAATAATCTCATGCGGGTTCATGTGAAGGCTGGACGGACTGAAAAGGTATTGCAAGTTTACAATCAAATGAAGAGACTTGGTTGTCCTGCTGATACAATTAGCTATAATTTTCTGATAGAGAGTCATTGTAGAGATGAGAATCTTGATGAAGCTGTGAAAGTTCTCAATTTAATGGTTAAGAAAGAGGTTTCTCCTAATGCTTCCACCTTCAATTCAATTTTTGGATGCGTAGCTAAGTTACATGATGTAAATGCTGCCCATAGAATGTATGCTAGAATGAAGGGACTGAATTGTCAACCGAATACTTTGACTTACAATATATTGATGAGGATGTTTGCTGACTCAAAATCTACTGATATGGTCCTCAAATTGAAGAAGGAAATGGATGAGAGTGAAGTTGAACCTAATGTGAATACTTACAGAATTTTGATTTCAATGTTTTGTCAAATGGGGCACTGGAACAATGCATACAAGTTAATGAAGGAGATGGTTGAAGAAAAATGCCTAAAACCAAATCTATCAGTGTATGAAATGGTTCTGGAGCTGCTGAGGAAGGCCGGACAGCTAAAAAAGCATGAAGAGTTGGTGGATAAGATGGTGGCTAGGGGATTTGTCTCTCGCCCTTTGTAG 1587 0.4297 MAFIKSRVRLHHSLSPLLPRTFKLYSSSALVSEPHLEHDTDDTPQTTTLSPEETNIADKFHTLIKDHYRKNPNPNPTPPSPNFTIPDLSIDFSKISTAHSISPSIARRVIEKCGGVRHGIPFLQSLTFFYWATTLDGFPSSPEPYNEIIDLAGKLRQFDLPWHLIDLMKARGVEITMDTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCTPDKVAFSIVISSLCRKRRASEAQSFFDSLKHRFEPDVIVYTSLIHGWCRAGNISKAEEVFSDMKIAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPADTISYNFLIESHCRDENLDEAVKVLNLMVKKEVSPNASTFNSIFGCVAKLHDVNAAHRMYARMKGLNCQPNTLTYNILMRMFADSKSTDMVLKLKKEMDESEVEPNVNTYRILISMFCQMGHWNNAYKLMKEMVEEKCLKPNLSVYEMVLELLRKAGQLKKHEELVDKMVARGFVSRPL. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 388 421 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 247 281 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 352 386 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 179 211 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 458 491 IPR002885 -
Seca4g00366 528 NCBIfam pentatricopeptide repeat 282 316 IPR002885 -
Seca4g00366 528 Gene3D Tetratricopeptide repeat domain 240 334 IPR011990 GO:0005515
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Seca4g00366 528 Gene3D Tetratricopeptide repeat domain 335 447 IPR011990 GO:0005515
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Seca4g00366 528 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 21 409 - -
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 241 IPR002885 -
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Seca4g00366 528 Pfam PPR repeat family 183 224 IPR002885 -
Seca4g00366 528 Pfam PPR repeat family 419 468 IPR002885 -
Seca4g00366 528 Pfam PPR repeat family 244 293 IPR002885 -
Seca4g00366 528 Pfam PPR repeat family 350 396 IPR002885 -
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Seca4g00366 528 SUPERFAMILY TPR-like 213 483 IPR011990 GO:0005515
Seca4g00366 528 Gene3D Tetratricopeptide repeat domain 117 239 IPR011990 GO:0005515
Seca4g00366 528 Gene3D Tetratricopeptide repeat domain 448 521 IPR011990 GO:0005515
Seca4g00366 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Seca4g00366 528 Pfam PPR repeat 317 347 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00366 Seca-Chr4 5965896 5968745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00366 135 523 Glycosyltransferase AT1G05670 26.154 4.65e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00366 - - gmx:100800850 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00366 4 5965896 5968745 Seca4g00366 4 5965896 5968745 ECH