Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00361 ATGGACCCCTTCTCTCTCTTATGCACCGGAGCTCTCCTCGCCGGCGGCCTTTACTGGTTCGTCTGCATTCTCGGCCCAGCCGAACAAAAAGGCAAACGCGCCACCGATCTATCCGGTGGCTCCATCTCCGCCGAGAAAGTCCAAGACAACTACAAGCAGTACTGGTCCTTCTTCCGCCGCCCTAAGGAGATCGAAACCGCTGAGAAAGTCCCCGACTTCGTCGACACTTTCTACAATTTAGTAACCGATATCTACGAATGGGGTTGGGGTCAGTCCTTCCATTTCTCTCCTTCCATCCCTGGCAAATCTCACCGTGACGCCACGCGCCTCCATGAGGAGATGGCTGTCGATCTCATCGAGGTCAAGCCTGGCGACAAAATCCTCGATGTAGGTTGCGGTGTGGGTGGGCCCATGCGAGCCATCGCCGCTCACTCGCGCGCCAACGTCGTGGGCATCACAATCAACGAGTATCAGGTGAATCGAGCCAAGTTACACAACAAGAAAGCAGGGCTTGACTCTTTATGCGATGTGGTGTGTGGCAATTTCCTCCAAATGCCTTTCCCCGACGAGAGCTTCGACGGCGCGTACTCCATCGAGGCCACGTGTCACGCGCCGAAGCTGGAGGAGGTGTATGCGGAAATCTTTAGGGTTCTGAAGCCAGGGGCACTTTACGTTTCCTATGAGTGGGTCACAACGGACAAGTATAGAGGAGAAAACCCTGAACATGTGGAGATTATTCAAGGGATTGAGAGAGGAGATGCATTGCCTGGGCTTAGGAGCTATGCTGATATAGCCGAAACAGCGAAGAAGGTTGGGTTCGAGGTGGTGAAGGAGCGGGATCTGGCGAAGCCACCGGCTCAGCCGTGGTGGAGCCGGTTGAAGATGGGAAGGATCGCTTACTGGCGGAACCACATCGTGGTTACTGTTCTTGCGGCTTTGGGAATAGCACCAAAAGGAACGGTGGATGTTCATGAGATGCTATTTAAGACTGCTGACTATTTGACCAGAGGGGGTGACACTGGAATTTTCTCTCCGATGCACATGATTCTCTGCAGAAAACCCAAAGCCAAAGAAGACTCACATACTTAG 1089 0.5344 MDPFSLLCTGALLAGGLYWFVCILGPAEQKGKRATDLSGGSISAEKVQDNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIEVKPGDKILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAKLHNKKAGLDSLCDVVCGNFLQMPFPDESFDGAYSIEATCHAPKLEEVYAEIFRVLKPGALYVSYEWVTTDKYRGENPEHVEIIQGIERGDALPGLRSYADIAETAKKVGFEVVKERDLAKPPAQPWWSRLKMGRIAYWRNHIVVTVLAALGIAPKGTVDVHEMLFKTADYLTRGGDTGIFSPMHMILCRKPKAKEDSHT. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00361 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 354 IPR029063 -
Seca4g00361 362 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168
Seca4g00361 362 Pfam Sterol methyltransferase C-terminal 291 354 IPR013705 GO:0006694|GO:0008168
Seca4g00361 362 FunFam Methyltransferase 44 305 - -
Seca4g00361 362 CDD AdoMet_MTases 126 230 - -
Seca4g00361 362 Pfam Methyltransferase domain 128 224 IPR013216 GO:0008168
Seca4g00361 362 Gene3D Vaccinia Virus protein VP39 44 309 IPR029063 -
Seca4g00361 362 PANTHER - 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00361 Seca-Chr4 5918938 5920026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00361 116 280 Acyl Lipid Metabolism Gene Families AT1G73600 28.485 2.51e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00361 K08242 - gmx:100804517 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00361 4 5918938 5920026 Seca4g00361 4 5918938 5920026 ECH