Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00358 ATGGCCACCGTCACTTCTACCGCTGTTGCCATTCCATCATTCACTGGCCTTAAGGTAAGTGGAACAAACGCAGGCAAAGTTAGTGCCACAACTAAGGTTTCAACAACTTCCCAATTGCCAAGGTTGGGAATCAAGGCTTCACTTAAAGATGTTGGAGTTGCTGTTGTTGCTACTGCTGCAAGTGCAGTGCTAGCTAGCAATGCCATGGCTATTGAAGTGTTGCTTGGTGGTGATGATGGGTCTCTTGCTTTTGTTCCCAACAATTTCTCAGTGGCCCCTGGGGAAAAGATTGTGTTCAAGAACAATGCTGGTTTCCCACACAACATTGTGTTCGATGAGGACGAGATTCCTGGCGGTGTTGATGCGTCGAAAATCTCCATGCCTGAAGAAGATCTTCTCAATGGACCTGGTGAGACTTACACTGTTGCCCTTGATGCCAAGGGAACCTACAGTTTCTACTGTGCCCCTCACCAAGGAGCTGGTATGGTTGGAAAAGTCACTGTTAATTAA 510 0.4706 MATVTSTAVAIPSFTGLKVSGTNAGKVSATTKVSTTSQLPRLGIKASLKDVGVAVVATAASAVLASNAMAIEVLLGGDDGSLAFVPNNFSVAPGEKIVFKNNAGFPHNIVFDEDEIPGGVDASKISMPEEDLLNGPGETYTVALDAKGTYSFYCAPHQGAGMVGKVTVN. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00358 169 CDD Plastocyanin 71 169 IPR002387 GO:0005507|GO:0009055
Seca4g00358 169 PRINTS Type I copper blue protein family signature 90 103 IPR001235 GO:0005507|GO:0009055
Seca4g00358 169 PRINTS Type I copper blue protein family signature 146 160 IPR001235 GO:0005507|GO:0009055
Seca4g00358 169 PRINTS Type I copper blue protein family signature 105 120 IPR001235 GO:0005507|GO:0009055
Seca4g00358 169 SUPERFAMILY Cupredoxins 68 169 IPR008972 -
Seca4g00358 169 Gene3D - 71 169 IPR008972 -
Seca4g00358 169 PRINTS Plastocyanin signature 99 117 IPR002387 GO:0005507|GO:0009055
Seca4g00358 169 PRINTS Plastocyanin signature 76 95 IPR002387 GO:0005507|GO:0009055
Seca4g00358 169 PRINTS Plastocyanin signature 148 167 IPR002387 GO:0005507|GO:0009055
Seca4g00358 169 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 25 169 - -
Seca4g00358 169 Pfam Copper binding proteins, plastocyanin/azurin family 72 169 IPR000923 GO:0005507|GO:0009055
Seca4g00358 169 ProSitePatterns Type-1 copper (blue) proteins signature. 148 162 IPR028871 -
Seca4g00358 169 NCBIfam plastocyanin 71 169 IPR002387 GO:0005507|GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00358 Seca-Chr4 5842689 5843198 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00358 K02638 - qsu:112004456 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00358 4 5842689 5843198 Seca4g00358 4 5842689 5843198 ECH