Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00357 ATGCCTACACTAGTTGCTGAAGCATTCCAAGCCCTGGGAGCAACCGGGCCCGTGAGCCTGAAGCCCATTTTTTGTGCTTCAGGAGTCAAGGGCAAAGGAGTAACTGCACTATCTGCAGATCACACCCTCACTGACTTCATTCAATCCGTCATAACAGACAAACCAGACATCGAATCCCCATTTTCCGTCCTTGATTTAGGGGTCGTCATGGACCTCATGGACAACTGGGCCAGCAAGCTCCCTACGGTTCAACCTTTCTATGCCGTCAAGTGCAACCCCAACCTTTCCTTGATCGGCACACTTGCAGCACTTGGTTCCAGTTTCGACTGTGCCAGCAAAGCCGAGATCGAATCCGTTTTGTCTCTCGGAGTCTCACCGGACCGAATCATCTACGCAAACCCATGCAAATCAGAGTCCCACATCAAATACGCTGCCAGTGTTGGCGTTAACGTGACGACATACGATTCCATAGAGGAAGTTGAAAAGATACGCAAATGGCACCCAAAATGTGAGTTGCTTCTCCGCATCAAACCTCCACAAGACAGTAAAGCCCGTACCTGCTTGGGCCTCAAATACGGTGCGCTTCAGGAAGAAGTTCCGGAGCTTCTCAAAGCTGCTGACGTGGCAGGCCTCAAGGTGACTGGCGTGTCTTTCCACATCGGTAGTGGAGGAGCTGACACGCAAGCTTACCACGGAGCCATCGCAGCGGCTAAGAGTGTCTTCGAAACGGCATGTCGTTTAGGCATGCCAAGAATGCGTGTCCTTGACATAGGTGGTGGGTTCACTTCTGGGCCTCAGTTTGACGCTGCTGCTTTGAAAATAAACGCAGCCATTCAGGCCCACTTCGGGAATGAAGAGGGCCTTGTGGTTATTGGTGAGCCTGGCCGTTACTTTGCGGAAACGCCGTTTATCTTAGCTACAAAGGTTATTGGGAAGCGTGTGAGGGGTGAAGTGAGGGAGTATTGGATCGACGATGGGATTTATGGATCTTTAAATTGCATTATGTTTGACTTCGCAACCGTAACTTGCACGCCGCTCAGGTGTGCTTCAAAACCTGAGAATCCCACATGGAGAGACCCCAAGACTTACCCTTCCACTGTGTTTGGACCAACTTGCGATTCATTAGATACGGTTCTCAGAGATTACCAGCTCCCTGAACTGAAAGTGAACGATTGGCTTGTGTTCCCCAATATGGGTGCTTATACGACGTCGTCTGGGACCAACTTCAATGGGTTTAGCTCCTCAGCCAAACACACTTATCTTGCATATTCAAGTCATGCCTCGCGGGAACAAGCCATGTTCTAA 1305 0.5027 MPTLVAEAFQALGATGPVSLKPIFCASGVKGKGVTALSADHTLTDFIQSVITDKPDIESPFSVLDLGVVMDLMDNWASKLPTVQPFYAVKCNPNLSLIGTLAALGSSFDCASKAEIESVLSLGVSPDRIIYANPCKSESHIKYAASVGVNVTTYDSIEEVEKIRKWHPKCELLLRIKPPQDSKARTCLGLKYGALQEEVPELLKAADVAGLKVTGVSFHIGSGGADTQAYHGAIAAAKSVFETACRLGMPRMRVLDIGGGFTSGPQFDAAALKINAAIQAHFGNEEGLVVIGEPGRYFAETPFILATKVIGKRVRGEVREYWIDDGIYGSLNCIMFDFATVTCTPLRCASKPENPTWRDPKTYPSTVFGPTCDSLDTVLRDYQLPELKVNDWLVFPNMGAYTTSSGTNFNGFSSSAKHTYLAYSSHASREQAMF. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00357 434 Gene3D Alanine racemase 69 298 IPR029066 -
Seca4g00357 434 FunFam Ornithine decarboxylase 69 298 - -
Seca4g00357 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 87 105 IPR000183 GO:0003824
Seca4g00357 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 210 223 IPR000183 GO:0003824
Seca4g00357 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 290 309 IPR000183 GO:0003824
Seca4g00357 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 119 IPR000183 GO:0003824
Seca4g00357 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 399 412 IPR000183 GO:0003824
Seca4g00357 434 SUPERFAMILY Alanine racemase C-terminal domain-like 283 417 IPR009006 GO:0003824
Seca4g00357 434 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 40 421 IPR002433 GO:0006596
Seca4g00357 434 CDD PLPDE_III_ODC 58 420 - -
Seca4g00357 434 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 57 419 IPR009006 GO:0003824
Seca4g00357 434 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 301 399 IPR022643 GO:0003824
Seca4g00357 434 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 87 105 IPR022653 -
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 159 181 IPR002433 GO:0006596
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 386 399 IPR002433 GO:0006596
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 325 338 IPR002433 GO:0006596
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 59 83 IPR002433 GO:0006596
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 85 112 IPR002433 GO:0006596
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 129 153 IPR002433 GO:0006596
Seca4g00357 434 PRINTS Ornithine decarboxylase signature 366 376 IPR002433 GO:0006596
Seca4g00357 434 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 248 262 IPR022657 -
Seca4g00357 434 SUPERFAMILY PLP-binding barrel 65 299 IPR029066 -
Seca4g00357 434 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 69 299 IPR022644 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00357 Seca-Chr4 5772450 5773754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00357 K01581 - gmx:548088 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00357 4 5772450 5773754 Seca4g00357 4 5772450 5773754 ECH