Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00291 ATGTTTTCTTGTGAAAAATTAGCGAGCATAATGTTTTCTGAAAGATTGGGAGCAGACGAATCTCTTTGTCAGGATTTGCACAGTTTGAGTGTGTCAAGGCGTCTTGTGAGGAGTGTCAGCCAGAAGTTGAGGAAGAAGAACAACAGAAGTGCAGTGGAAGAAGATGATGATGATGCAAATGGAGTTTCTCTAAGCTGCCTAAATCTGTACAGTCGAGGTGGGGGCTGCAAGGTAGGCGCTGACACTAGTGATGAGTTTGGTGATTCAAGTGGTAGAAGGAGATCTAGTGCCAGTGAAGAAGGCAAGGGATATAAACCAATTTGTGGCCCTGAAGAAACTGCTGTCGATTGCTTCTCATATGGGGTGAAGGACAGGTTTTGGAGGAGACACAACAGAAAATATTCTGAACTTGAAGAACTGATAACAGACAATAGAATGCATATCTTTCTTCCAGATGATATTCTTGAAATGTGTTTGGTTAGGCTTCCATTGACAAGTCTCATGAATGCCCGCCTTGTTTGCAAAAAATGGAGGTCCTTGACTACCACCCCTAGATTCCTCCAAATGAGAAGGGAGGGTTCATATCAAAATCCATGGTTGTTTCTGTTTGGTGCCGTTAAAGATGGCTTTTGCTCTGGTGAGATACATGCATTGGATGTGTCTCTGAATCAATGGCATAGGATGGATGCTAGTTTTCTCAGAGGAAGGTTCTTGTTCTCTGTTGCTAGTATTCAGGATGATATCTTCATTGTTGGAGGATGTTCTAGCTTGACTAACTTTGGGAGAGTGGATAGGAGCTCCTTCAAGACACACAAAGGGGTGCTTGTATTTAGTCCCCTGACAAAATCTTGGCGTAAAATACCATCTATGAAATATGCTAGATCAATTCCTATATTAGGAATCTCTGAGGTCAGTTTGGATTTTCCAACTTGTCAAAGTTATCAAAGTCGGCAGGATAGACGTTTTCCAAGAACAAGGATTGGTGGGGTTTCAGATGTCTATGAGGACCCTCACAAACTTTCAATGAGACGTCATTGCAGAACTACTTTTAATGAGACCGAAGCTTCATCTCTGCCTAATAGAAAGGCATACAAATTCCTGAGACAAAGAAGTGATCATTCAAGCTCGAAGGGCAGTAGAAGATTTTTGTTGATAGCTGTAGGTGGTCTGGGATCTTGGGATGAGCCTCTGGACTCTGGAGAAATATATGATTCTGTATCAAATAAATGGACTGAAATGCCAAGATTGCCTTTTGATTTTGGGGTTGCTTGTTCTGGAATTGTCTGTGGCAGGATGTTTTATGTTTATTCTGAGACAGACAAGCTTGCAGCATATGACATAGAACGAGGTTTCTGGATTGCAATCCAAGTCACTCCAATCCCACCTCGTGTACATGAATACTACCCCAAACTTGTGTCTTCTAATGGTCGTCTTTTCATGCTCTCAGTGTCATGGTGCGAAGGGGATGGCCAAATTGGGCGAAGAAACAAGGCTGTTAGAAAATTATGGGAGTTGGATCTCATGTATCTTACCTGGAACGAAGTCTCAGTGCATCCTGATGCTCCAATGGACTGGAATGCTGTTTTTGTGGCAGACAAAAACCTGATTTTTGGGGTAGAGATGTTCAAAATATTTGGTCAGGTGTTGGATTTTTTCACTGTATGTGATGTGTCTGATATGGCAAACTGGAATCATATTTCAAGGAATCATGTTACTCATGAGCTGGATGGTTCTTCGTGCTTGACCAAATCTGTGGCAGTGCTACACCTTTGA 1773 0.4213 MFSCEKLASIMFSERLGADESLCQDLHSLSVSRRLVRSVSQKLRKKNNRSAVEEDDDDANGVSLSCLNLYSRGGGCKVGADTSDEFGDSSGRRRSSASEEGKGYKPICGPEETAVDCFSYGVKDRFWRRHNRKYSELEELITDNRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLQMRREGSYQNPWLFLFGAVKDGFCSGEIHALDVSLNQWHRMDASFLRGRFLFSVASIQDDIFIVGGCSSLTNFGRVDRSSFKTHKGVLVFSPLTKSWRKIPSMKYARSIPILGISEVSLDFPTCQSYQSRQDRRFPRTRIGGVSDVYEDPHKLSMRRHCRTTFNETEASSLPNRKAYKFLRQRSDHSSSKGSRRFLLIAVGGLGSWDEPLDSGEIYDSVSNKWTEMPRLPFDFGVACSGIVCGRMFYVYSETDKLAAYDIERGFWIAIQVTPIPPRVHEYYPKLVSSNGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWNEVSVHPDAPMDWNAVFVADKNLIFGVEMFKIFGQVLDFFTVCDVSDMANWNHISRNHVTHELDGSSCLTKSVAVLHL. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00291 590 FunFam F-box/kelch-repeat protein isoform A 163 311 - -
Seca4g00291 590 Pfam F-box domain 150 186 IPR001810 GO:0005515
Seca4g00291 590 ProSiteProfiles F-box domain profile. 144 190 IPR001810 GO:0005515
Seca4g00291 590 PANTHER OS09G0555300 PROTEIN 11 590 - -
Seca4g00291 590 FunFam F-box/kelch-repeat protein isoform A 348 575 - -
Seca4g00291 590 Pfam Kelch motif 384 417 IPR006652 GO:0005515
Seca4g00291 590 SUPERFAMILY Kelch motif 383 538 IPR015915 GO:0005515
Seca4g00291 590 SUPERFAMILY F-box domain 149 212 IPR036047 GO:0005515
Seca4g00291 590 CDD F-box_AtFBW1-like 149 186 - -
Seca4g00291 590 MobiDBLite consensus disorder prediction 86 100 - -
Seca4g00291 590 SMART fbox_2 150 190 IPR001810 GO:0005515
Seca4g00291 590 Pfam Kelch motif 238 294 - -
Seca4g00291 590 Gene3D - 330 575 IPR015915 GO:0005515
Seca4g00291 590 SUPERFAMILY Kelch motif 197 297 IPR015915 GO:0005515
Seca4g00291 590 SMART kelc_smart 383 430 IPR006652 GO:0005515
Seca4g00291 590 SMART kelc_smart 247 304 IPR006652 GO:0005515
Seca4g00291 590 MobiDBLite consensus disorder prediction 84 105 - -
Seca4g00291 590 Gene3D - 162 305 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00291 Seca-Chr4 4647759 4649531 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00291 - - ccaj:109802378 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00291 4 4647759 4649531 Seca4g00291 4 4647759 4649531 ECH