Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00231 ATGGCTCAGCCACTCGTGAAGAAGGACGATGACCGCGACGATGAAGTCGAGTATTCTCCCTTTTTGGGAATTGAAAAGGGGGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAACTAGATGCTAGGAGATGTTCTCAGGTTATTACAAAATTACTATACCTACTGAATCAGGGAGAGACGTTCACAAAGGTCGAAGCCACAGAAGTTTTCTTTGCCGTGACTAAGCTTTTCCAGTCTAGAGATATGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCAGATGAGGTCATTATCGTCACGAGCTCTCTCATGAAGGACATGAATAGCAAAATTGATATGTATAGGGCAAATGCTATTCGAGTGCTTTGTCGTATTACAGATGGAACCCTCCTCTCCCAAATTGAGCGGTATTTGAAACAAGCAATTGTGGATAAGAATCCAGTTGTTGCAAGTGCTGCCTTAGTTAGTGGCATCCATCTACTCCAGACAAATCCTGAAATTGTAAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCACGTGCAGCTCTTGTACAGTTTCATGCACTGGCTTTGTTACATCAGATACGACAGAATGATCGGCTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGAGGAACTGTTCGCTCACCTTTAGCCCAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCGTGAGTCAGGCAATAATACACAGTCAGGGGACCGTCCATTCTATGATTATCTTGAGACTTGCCTTCGCCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAGGGCAATTACAGAGCTCAATGGCGTAACAAGCAGAGAATTAACTCCAGCAATTACAGTTCTTCAGCTATTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTCGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGTCAGTCACTAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAATAGAAGCATTGCCACACTTGCTATTACTACACTTTTGAAGACAGGAAATGAATCAAGTGTGGATCGTCTTATGAAACAGATAACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTAGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTCCCTTTAAAATACCGATCTCTGATGAATTTCCTGAGTAACATTCTTAGGGAAGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTGATGCAAAGGAAGCAGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACGTATTTATCCACACAGATACTGCACTTCCTCGGAGTTGAAGGGCCAAAAACATCAGACCCCAGCAAATATATTCGTTTCATTTATAATAGAGTGCATCTTGAGAATGCAACCGTTAGGGCCAGTGCTGTCAGCACACTGGCAAAGTTCGGTGCTGCAGTTGATGCATTAAAGCCGCGCATATTTGTTCTTATAAGGCGATGCCTTTTTGACAGTGATGATGAGGTGAATTTCTCTCTCTTGTTTTATGAGGTTCGTGATAGGGCAACCTTTTATCTGAACACACTTGGAGGTGATGGTTCTGTTGTTGATACTGATATAGATGTAAAGGACTTCCTGTTTGGGCCATTTGATATCCCACTTGTCAATCTGGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACATTTACTCTGTGCCCAAGGAGGTCAAGTCTCAGCCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCAAGTGGGCCCCCATCAACTGCAGATGCATATGAGAGGATGTTTTTGGCCATTCCGGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCTGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATACGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACGAACACAATACCAGAGCAATTATTGGAAGATGTTATTGTAATTGTGGATGCTTCAGAAGCAGATAAGTTCTCAGAGGTATTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACCGACTTTTGTGGCATTTGAGAAACCTGAGGGAGTGCCAACACTTGGAAAATTTTCCAACATTCTGAAATTTATTGTTAAAGAGGTTGATCCAGGCACTGGTGAGGTTGAAGATGATGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAGGTTGTTTCAGCAGATTACGTGTTGAAAGTGGGGGTATCTAATTTCAGAAATGCATGGGAAAGCATGGGCCCGGATTGTGAGCGAGTGGATGAGTATGGTCTTGGTCCTAGGGAGAGCTTGGCTGAAGCTGTAAATACTGTCATCAACCTTCTTGGCATGCAGCCCTGTGAGGGCACAGAGGTTGTTCCACCCAATTCAAGATCACACACATGTTTATTGTCAGGTGTATTCATAGGGAATGTAAAGGTGCTCGTGCGGTTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCAATGAAACTGGCTGTCAGATCTGAGGATGAAACTGTCAGCGATGCCATTCATGAGATTGTAGCAAGCGGATAA 2691 0.4314 MAQPLVKKDDDRDDEVEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSRDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGNNTQSGDRPFYDYLETCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMSVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKEAGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRFIYNRVHLENATVRASAVSTLAKFGAAVDALKPRIFVLIRRCLFDSDDEVNFSLLFYEVRDRATFYLNTLGGDGSVVDTDIDVKDFLFGPFDIPLVNLETSLKNYEPSEEAFDIYSVPKEVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERMFLAIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEADKFSEVFSKPLRSLPYDSPGPTFVAFEKPEGVPTLGKFSNILKFIVKEVDPGTGEVEDDGVEDEYQLEDLEVVSADYVLKVGVSNFRNAWESMGPDCERVDEYGLGPRESLAEAVNTVINLLGMQPCEGTEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLAVRSEDETVSDAIHEIVASG. 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00231 896 FunFam Coatomer subunit gamma 23 316 - -
Seca4g00231 896 Gene3D - 23 316 IPR011989 -
Seca4g00231 896 Pfam Coatomer gamma subunit appendage platform subdomain 631 776 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Seca4g00231 896 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 779 893 IPR032154 -
Seca4g00231 896 Gene3D - 778 894 IPR012295 -
Seca4g00231 896 MobiDBLite consensus disorder prediction 602 627 - -
Seca4g00231 896 SUPERFAMILY ARM repeat 29 549 IPR016024 -
Seca4g00231 896 SUPERFAMILY Clathrin adaptor appendage domain 626 780 IPR013041 -
Seca4g00231 896 Gene3D Coatomer, gamma subunit, appendage domain 626 777 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Seca4g00231 896 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 781 893 IPR009028 GO:0006886|GO:0016192|GO:0030117
Seca4g00231 896 FunFam Coatomer subunit gamma 333 550 - -
Seca4g00231 896 Pfam Adaptin N terminal region 29 549 IPR002553 GO:0006886|GO:0016192|GO:0030117
Seca4g00231 896 FunFam Coatomer subunit gamma 624 777 - -
Seca4g00231 896 PANTHER COATOMER SUBUNIT GAMMA 1 894 IPR017106 -
Seca4g00231 896 PIRSF Gamma-COP 7 894 IPR017106 -
Seca4g00231 896 FunFam Coatomer subunit gamma 778 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00231 Seca-Chr4 3642570 3650082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00231 K17267 - gmx:100789362 1639.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00231 4 3642570 3650082 Seca4g00231 4 3642570 3650082 ECH