LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00200	ATGGCATCTGCTTGTGTGACCTTGAAAGCCAACACCCATTTAGCTAACTCAAAAGAAGGTTACCTTTTTGGCCAAGATTATGGCTTTCTAGGGGAAAGAATCAAAGGTGGTAGCTTGAACAACATGAATCACTTGGCTAAACGTTTGACAACACAGAATCAGAAGAGGGTCAAACCTGGTGCTGTATCTGCTGTTCTTACTTCAAATAATGATGCCAAAGGAACCCTGACGTTGCAAGTGCCTTCATTTCTGAGAAGAAGGGCTGACCCAAAAAATGTTATTTCCATTATATTGGGAGGAGGACCTGGGACACAACTCTATCCTCTCACCAAACGAGCTGCAACACCTGCGGTTCCTGTTGGTGGATGCTACAGGCTTATAGACATCCCAATGAGTAACTGCATCAATAGTGGCATCAACAAAATATGTGTGCTAACCCAATTCAACTCTGCATCCCTCAACCGTCACATCGCCCGCACCTATTTTGGGAATGGCATCAACTTTGGGGATGGATTTGTGGAGGTTCTGGCAGCTACTCAAACACCAGGAGAGGCTGGAAAGAAATGGTTCCAAGGAACTGCAGATGCTGTGAGGCAATTTACATGGATATTTGAGGATGCCAAGAACATAAACATTGAAAATGTGTTGATCTTGGCTGGAGATCATCTATACCGAATGGACTATATGGACCTTGTTCAGAGTCATGTTGATAGAAATGCTGATATTACAATTTCATGTGCTGCTGTGGGTGACAGCCGTGCATCAGATTATGGATTGGTCAAGGTAGATGAAAGAGGCCGCATCATCCAATTTTCAGAAAAACCAAAGGGTGCTGATCTGAAAGCAATGCAAGTAGATACCTCTCTTCTTGGGTTGTCTCCCCAAGATGCATCAAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGAGAGATGTTTTACTCAAGCTTCTGAAATGGAGATATCCTACATCCAATGACTTCGGATCTGAAATCATTCCTTCAGCTATAAGGGAACACGATGTCCAAGCGTATTTTTTCAGAGACTATTGGGAAGACATTGGAACAATAAAATCCTTTTATGATGCTAACCTTGCTCTTGCAGAAGAGAGTCCAAATTTTGAATTCTATGATCCCAAGACACCCATTTTCACATCTCCAGGATTCCTACCACCAACAAAGATTGACAAATGCAGGATTATGGATGCCATTATCTCCCATGGATGTTTTCTGCGAGAATGTACAGTCCAACACTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGCGTTGAGCTTCAGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCTGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTCCCTATTGGGATTGGCAGGAATACCAAAATTAGGAACTGCATTATTGACAAGAATGCTAAGATCGGGAAAGATGTCATCATCATGAACAAAGATGGCGTTCAAGAAGCAGATAGATCAGAAGATGGGTTCTACATTAGATCAGGAATCACCATCGTAATGGAGAAGGCAACAATAGAAGATGGCACTGTCATATAA	1578	0.4252	MASACVTLKANTHLANSKEGYLFGQDYGFLGERIKGGSLNNMNHLAKRLTTQNQKRVKPGAVSAVLTSNNDAKGTLTLQVPSFLRRRADPKNVISIILGGGPGTQLYPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKICVLTQFNSASLNRHIARTYFGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWIFEDAKNINIENVLILAGDHLYRMDYMDLVQSHVDRNADITISCAAVGDSRASDYGLVKVDERGRIIQFSEKPKGADLKAMQVDTSLLGLSPQDASKSPYIASMGVYVFKRDVLLKLLKWRYPTSNDFGSEIIPSAIREHDVQAYFFRDYWEDIGTIKSFYDANLALAEESPNFEFYDPKTPIFTSPGFLPPTKIDKCRIMDAIISHGCFLRECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVQEADRSEDGFYIRSGITIVMEKATIEDGTVI.	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00200	525	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	304	314	IPR005836	GO:0005978\|GO:0008878
	Seca4g00200	525	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	189	197	IPR005836	GO:0005978\|GO:0008878
	Seca4g00200	525	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	81	390	IPR029044	-
	Seca4g00200	525	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	99	118	IPR005836	GO:0005978\|GO:0008878
	Seca4g00200	525	FunFam	Glucose-1-phosphate adenylyltransferase	76	390	-	-
	Seca4g00200	525	SUPERFAMILY	Trimeric LpxA-like enzymes	388	525	IPR011004	-
	Seca4g00200	525	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	91	486	IPR029044	-
	Seca4g00200	525	Gene3D	Hexapeptide repeat proteins	391	525	-	-
	Seca4g00200	525	CDD	ADP_Glucose_PP	96	356	-	-
	Seca4g00200	525	Pfam	Nucleotidyl transferase	95	371	IPR005835	GO:0009058
	Seca4g00200	525	CDD	LbH_G1P_AT_C	393	519	-	-
	Seca4g00200	525	NCBIfam	glucose-1-phosphate adenylyltransferase	93	489	IPR011831	GO:0005978\|GO:0008878
	Seca4g00200	525	FunFam	Glucose-1-phosphate adenylyltransferase	391	525	-	-
	Seca4g00200	525	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	41	525	IPR011831	GO:0005978\|GO:0008878

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00200	Seca-Chr4	3187679	3192760	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00200	K00975		-	gmx:100796717	914.835

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g00200	4	3187679	3192760	Seca4g00200	4	3187679	3192760	ECH