Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00181 ATGGCTGGTGATTCTTTGGTAATCTCCAATGGCGATGGTAATGGTGGTATCAACCCAATACCTAATCAGCAGAGAACTTACCAAGTGGTAGTGGCCGCCACCCAAGATATGGGCATTGGTAAGGATGGAAAATTACCTTGGAGATTACCTACTGATCTCAAATTTTTCAAAGAGATCACTACCACAACATCTGATCCTGGGAAAAAGAATGCCGTTATTATGGGACGGAAAACATGGGAGAGTATCCCTCTTCAGTACAGACCTCTTTCTGGTCGCCTTAATGTTGTTTTGACTCGCTCAGGTAGCTATGATATTGCAACAGCAGAGGATGTTGTTATATGTGGTAGTATGTCTTCTGCATTGGAACTTTTAGGCGCTTCTCCTTATTGTATGTCAATTGAGAAAGTATTTGTTATAGGAGGCGGTCAGATATTTAGAGAGGCTCTCAATGCACCTGGGTGTGAAGCTATCCACATCACAGAAATTCATGCAAGCAGTGAATGTGACACTTTTATGCCTGCAGTTGATTCCACTATATTTCGGCATTGGTACTCATCCTTTCCTAAGGTGGAAAACAACATCTGCTATTCTTTCACTACTCATGTGCGTGTACGGAGTTCTGCACCAGAGTCCCTGAGTCAGAATACTGATCCACCTTTTGATAATAATTCAGATTCATTAAAATTTGAGGTTCAAAAATTTTCTTTTCTTCCTAAAATGATTCTTGAGAGACATGAGGAGTACATGTATCTTAGGTTGGTTCAAGAAATCATATCTGAAGGTGCAACTAAGGATGATAGGACAGGAACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCGCAGAAGCTTTCCTCTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTATTGAAGAACTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGTTACAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCGAGAGAATACCTCGATAGTATTGGTTTCACAGAGAGGGAGGAAGGTGACTTGGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACTGACATGCATAATGACTACACTGGACAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGACGAATCATTCTCTCTGCATGGAATCCAGCTGATTTAAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGTTCTATGTAGCAAATGGGGAGTTGTCATGTCAAATGTATCAACGATCAGCTGATATGGGCCTCGGTGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGAACTTGTTCCAGGGAATTTTATCCATGTTATTGGGGATGCACATGTTTACCACAATCATGTGAGGCCTTTGCAGGAGCAGCTTGATAACCTGCCAAAACCTTTTCCAACTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCATAAGATTGAGATGAAGATGGCTGTTTAA 1593 0.4093 MAGDSLVISNGDGNGGINPIPNQQRTYQVVVAATQDMGIGKDGKLPWRLPTDLKFFKEITTTTSDPGKKNAVIMGRKTWESIPLQYRPLSGRLNVVLTRSGSYDIATAEDVVICGSMSSALELLGASPYCMSIEKVFVIGGGQIFREALNAPGCEAIHITEIHASSECDTFMPAVDSTIFRHWYSSFPKVENNICYSFTTHVRVRSSAPESLSQNTDPPFDNNSDSLKFEVQKFSFLPKMILERHEEYMYLRLVQEIISEGATKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVIEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGFTEREEGDLGPVYGFQWRHFGARYTDMHNDYTGQGFDQLLDVINKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGNFIHVIGDAHVYHNHVRPLQEQLDNLPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHHKIEMKMAV. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00181 530 Pfam Thymidylate synthase 249 530 IPR023451 -
Seca4g00181 530 Pfam Dihydrofolate reductase 28 202 IPR001796 GO:0004146|GO:0046654
Seca4g00181 530 PANTHER THYMIDYLATE SYNTHASE 1 49 530 IPR045097 GO:0016741
Seca4g00181 530 CDD DHFR 30 202 IPR001796 GO:0004146|GO:0046654
Seca4g00181 530 ProSitePatterns Thymidylate synthase active site. 392 420 IPR020940 GO:0004799|GO:0006231
Seca4g00181 530 PRINTS Thymidylate synthase family signature 288 309 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 PRINTS Thymidylate synthase family signature 463 480 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 PRINTS Thymidylate synthase family signature 381 400 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 PRINTS Thymidylate synthase family signature 425 451 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 PRINTS Thymidylate synthase family signature 407 422 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 NCBIfam thymidylate synthase 249 530 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 FunFam Possible thymidylate synthase 241 530 - -
Seca4g00181 530 Hamap Thymidylate synthase [thyA]. 247 530 IPR000398 GO:0004799|GO:0006231
Seca4g00181 530 Gene3D Dihydrofolate Reductase, subunit A 16 204 IPR024072 -
Seca4g00181 530 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 38 60 IPR017925 GO:0004146
Seca4g00181 530 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 9 204 - -
Seca4g00181 530 SUPERFAMILY Dihydrofolate reductase-like 21 203 IPR024072 -
Seca4g00181 530 PIRSF DHFR-TS 11 530 IPR012262 GO:0004146|GO:0004799|GO:0006730
Seca4g00181 530 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 227 530 IPR036926 -
Seca4g00181 530 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 239 530 IPR036926 -
Seca4g00181 530 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 26 205 IPR001796 GO:0004146|GO:0046654
Seca4g00181 530 CDD TS_Pyrimidine_HMase 250 483 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00181 Seca-Chr4 2940538 2944033 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00181 K13998 - gmx:547833 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00181 4 2940538 2944033 Seca4g00181 4 2940538 2944033 ECH