Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00151 ATGGAAGCTATCAGAAAACAAGCCTCCAAGCTTCGAGAACAGGTCGCTCGCCAACAGCAGGCTGTGCTGAAACAGTTTGGTGCTGGGGGATATGGAGGTTCAGATAATATGGTTACTGATGAGATAGAGCTTCAGCAACATCAGAAACTGGAGAAGCTTCACATATCAACACGGGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTATATCGTTACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTGCAGAAAATACATGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCCCGTGCCCGTGCCCAAATGGAGAAGGAGCGTGGGAACTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCATTGGAAGATGCTCGGCATCTTGCTCAACGTTATGACAGAATGCGACAGGATGCTGAAGCCCAGGCTATTGAAGTTTCCAAACGCCAGGCGAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCAATGAAACTTGAAGCAGCTGAAGCAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAGGAAGCAGCTGCAGCAATGGCTGCTGTTGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAGTACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGTATTGAAGCCCCTCCTACACCTAGTGTGGATAACAGCATGCCGCCACCCCCATCATACGAAGAAGTAAATGGTGTCTATGCTTCTCAGGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTTTTATTTCCCTATCATGCTGAGTCTGAAGTTGAACTGAATTTATCAGTTGGGGATTATATCGTCATCCGAAAGGTTTATGACTTGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTTGCAAGCAAGGTGGCTGAAGTGTTTTGA 1128 0.4592 MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEIELQQHQKLEKLHISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSRAALNYARARAQMEKERGNLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKVRETPGNAENAMKLEAAEAKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQVLDQLEGEMISERQRIEAPPTPSVDNSMPPPPSYEEVNGVYASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVYDLVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00151 375 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 365 IPR001452 GO:0005515
Seca4g00151 375 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Seca4g00151 375 Coils Coil 149 169 - -
Seca4g00151 375 Coils Coil 1 21 - -
Seca4g00151 375 Coils Coil 220 240 - -
Seca4g00151 375 Coils Coil 186 213 - -
Seca4g00151 375 SMART SH3_2 305 364 IPR001452 GO:0005515
Seca4g00151 375 SUPERFAMILY SH3-domain 299 366 IPR036028 GO:0005515
Seca4g00151 375 Gene3D SH3 Domains 301 364 - -
Seca4g00151 375 PANTHER SH3 DOMAIN-CONTAINING 16 363 - -
Seca4g00151 375 Pfam Variant SH3 domain 309 361 IPR001452 GO:0005515
Seca4g00151 375 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00151 Seca-Chr4 2229279 2234743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00151 - - gmx:100783004 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00151 4 2229279 2234743 Seca4g00151 4 2229279 2234743 ECH