Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00147 ATGAGTTCAGACAGCCGTAGCCGGAGCAGGAGCAGGAGCAGGAGCCCAATGGATCGTAAGATCCGCTCTGATCGATTTTCCTATCGTGATGCACCGTACAGGAGAGATTCACGTCAGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGGCCTGGTCATTATGCTAGAGAATGCCCTAATGTTGCAATTTGCCACAATTGTGGTCTCCCTGGGCACATTGCTTCTGAATGTACCACAAAATCTCTGTGCTGGAATTGTAAAGAACCTGGTCACATGGCCAGCAATTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAGCTGGACACCGTGCTAGGGAGTGCTCAGCTCCTCCAATGCCTCCAGGGGACTTAAGATTGTGCAACAACTGCTATAAGCAGGGTCACATTGCAGCTGAATGTACGAATGAGAAGGCTTGCAACAACTGTAGGAAGACAGGCCACTTGGCACGTGATTGTTCTAATGATCCGATTTGCAATTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAAGCCAACACCCTTGGAGACCGCAGTGGTGGAGGTGGTGTTCGTGGTGGTGGTTATCGAGATATTGTTTGCAGGAACTGCCAGCAATTGGGTCACATGAGTAGGGATTGCATGGGGCCCTTGATGATTTGTCACAATTGTGGAGGTCGTGGCCACCTGGCATATGAGTGCCCTTCAGGTAGGTTTATTATGGATCGCTATCCCAGGAGGTACTGA 762 0.4974 MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRQGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCSNDPICNLCNVSGHVARQCPKANTLGDRSGGGGVRGGGYRDIVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFIMDRYPRRY. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 205 221 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 225 241 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Gene3D - 82 101 - -
Seca4g00147 253 PANTHER - 7 245 - -
Seca4g00147 253 Gene3D - 201 243 - -
Seca4g00147 253 Gene3D - 8 81 - -
Seca4g00147 253 Gene3D - 102 146 - -
Seca4g00147 253 Gene3D - 147 198 - -
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 206 219 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 226 241 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Seca4g00147 253 SUPERFAMILY Retrovirus zinc finger-like domains 198 242 IPR036875 GO:0003676|GO:0008270
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SUPERFAMILY Retrovirus zinc finger-like domains 37 82 IPR036875 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 205 219 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 Pfam Zinc knuckle 225 241 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Seca4g00147 253 SUPERFAMILY Retrovirus zinc finger-like domains 124 165 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00147 Seca-Chr4 2185443 2188328 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00147 K09250 - gmx:100803820 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00147 4 2185443 2188328 Seca4g00147 4 2185443 2188328 ECH